PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.0FI9Y

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 264aa MW: 29712.8 Da PI: 8.2361

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.0FI9Y	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.7e-13	28	72	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W+ eE++++++a +++ + Wk+I +g +t q++s+ qky Araip.0FI9Y 28 RESWSDEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 72 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.81E-17	22	78	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.455	23	77	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-6	26	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-18	26	75	IPR006447	Myb domain, plants
SMART	SM00717	5.3E-11	27	75	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-11	28	72	IPR001005	SANT/Myb domain
CDD	cd00167	9.38E-9	30	73	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MAPSSSSTST DQASTKKVRK PYTITKSRES WSDEEHDKFL EALQLFDRDW KKIEDFVGSK 60 TVIQIRSHAQ KYFLKVQKNG TTAHVPPPRP KRKAAHPYPQ KAAKNVLMPF PASIAYDSSR 120 NTLLRGYAVT WDENSMLMNA ESNKLMPCQD ELITNLTGNE DDIGSRGIRM PAATEMPNHG 180 KQACVIPGLP DFAEVYSFIG SVFDPDTRGH VHKLKEMDPI NFETVLLLMK NLTINLSSPD 240 IEPFLAVPNL DGRPQFHEAR VSKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.0FI9Y

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF208673	4e-91	KF208673.1 Arachis hypogaea putative MYB-related protein 19 (MYB19) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016207955.1	0.0	protein REVEILLE 8 isoform X2
Refseq	XP_020960039.1	0.0	protein REVEILLE 8 isoform X2
Refseq	XP_025663680.1	0.0	protein REVEILLE 8 isoform X2
Swissprot	Q8RWU3	1e-115	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A444YN71	0.0	A0A444YN71_ARAHY; Uncharacterized protein
STRING	GLYMA19G36170.1	1e-133	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6735	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	1e-101	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]