PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0H7G4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 246aa    MW: 26507.7 Da    PI: 8.6512
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0H7G4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17.5e-09112132526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+++ + G C++G+rCkF H+
  Araip.0H7G4 112 VCNYWIQ-GNCNFGERCKFLHS 132
                  6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1222147IPR000571Zinc finger, CCCH-type
SMARTSM003560.462146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7108132IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-7111131IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5112132IPR000571Zinc finger, CCCH-type
SuperFamilySSF509783.14E-17130245IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.1E-15132240IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.3E-5138177IPR001680WD40 repeat
PROSITE profilePS5029413.686145186IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.986145186IPR001680WD40 repeat
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDLDGGNKRV YQRLGGPSGD SKHQKVCYHW QAGKCNRHPC PFLHSELPTP NVNGTSSKRP  60
HGSADNSGFS GHRRNPHFNN TWGRGGGRGG GRGASGGVVG GDMSVVRKAD KVCNYWIQGN  120
CNFGERCKFL HSWNTGDGFS MLTQLEGHQK VVSGIAFPSG SDKLYTGSTD ESVRVWDCQS  180
GKCVAVINLG GEVGCMISEG PWVFVGIPNF VKVWNTQNSM ELSLNGPVGQ VYALVVNNDM  240
LFAGTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391RGGGRGGGR
28392RGGGRGGGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0H7G4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016164245.20.0zinc finger CCCH domain-containing protein 48 isoform X1
SwissprotQ9FNZ21e-103C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A444YY951e-180A0A444YY95_ARAHY; Uncharacterized protein
STRINGGLYMA09G27300.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-101zinc finger WD40 repeat protein 1