PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0NP64
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 325aa    MW: 35505.2 Da    PI: 9.1764
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0NP64genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.82.7e-31151207158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p+YVNaKQy++I++RRq+Rak+  ++kl +k rkpy+heSRh hA+rRpRg+gGrF
  Araip.0NP64 151 DGPIYVNAKQYHGIIRRRQSRAKAVLDNKL-TKRRKPYMHESRHLHAMRRPRGCGGRF 207
                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-35149210IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.492150210IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.5E-23153175IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.3E-27153207IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.5E-23184207IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAKQSVYPNK EHEGIVHNSS GPWWSLFGSQ YGESCGQMKP FSLEIPNYVD QIATGKQSVR  60
GAENISGKGH TTQFTIFPDD CKMPCGAQKP QAALSLQSPL ADTNTRFELG FNQPMICAKY  120
PYMDQIYGLF SPYGPQISGR IMLPLSMTSD DGPIYVNAKQ YHGIIRRRQS RAKAVLDNKL  180
TKRRKPYMHE SRHLHAMRRP RGCGGRFLNT KNSDDQNDKS GNKVIKALGE QLQSCGSQSS  240
EVLQSEVGTL NSSKETNGSS PNISGSEVTS MYSRGGLDSF AISHLGSAVT VHSLADMIDG  300
GRGMNMIMPP KWVAAVGGNC CNLNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18153214465NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165184RRRQSRAKAVLDNKLTKRRK
2165185RRRQSRAKAVLDNKLTKRRKP
3166185RRQSRAKAVLDNKLTKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0NP64
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181144.10.0nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_016181145.10.0nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_025682743.10.0nuclear transcription factor Y subunit A-10
RefseqXP_025682745.10.0nuclear transcription factor Y subunit A-10
TrEMBLA0A444X8Y50.0A0A444X8Y5_ARAHY; Uncharacterized protein
STRINGXP_007162983.11e-171(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.23e-65nuclear factor Y, subunit A10