PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0P3IP
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 444aa    MW: 49673.1 Da    PI: 6.2081
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0P3IPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.63.3e-231054246
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 ri+n++ rqvtfskRrng+lKKA+EL +LCd+ev v+ifsst+ +
  Araip.0P3IP 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDVEVGVMIFSSTNSM 54
                 8*****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.777154IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-22157IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-31160IPR002100Transcription factor, MADS-box
CDDcd002654.47E-30252No hitNo description
PRINTSPR004047.6E-20323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-221054IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-203859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.25.40.301.3E-5482217IPR012331Clathrin, heavy chain, linker
SuperFamilySSF483715.29E-4184210IPR016024Armadillo-type fold
PfamPF138381.4E-2385144No hitNo description
SuperFamilySSF483711.78E-29167348IPR016024Armadillo-type fold
SuperFamilySSF886971.79E-6350395IPR015947PUA-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MGTGKIAIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD VEVGVMIFSS TNSMISPVPA  60
AQDSEKGKGW KRFEFDKDAP LEDEEIEAER FHELFAQTKY KEAAELAAES LQGILRTPDT  120
VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NAFESLELSR LVVNQNKKNL LENWLAEDKL  180
ECSEELGDLV KTVDNDLALK IYIKARATPK VVAAFAERRE FDKILIYSKQ VGYTPDYLFL  240
LQTILRTDPQ GAVNFALMMS QMEGGSPLDY NTITDLNLIR EATAFLLDVL KPNLPKHAFL  300
QTKVLEINLV TFPNVADAIL ANGMFSHYDR PQLPDIKRVI VNTNAIEPQV RRIMEGNHRM  360
GMVITDSSTG SLAEYGCEVE ITECEPLPDG RFYIEAHMAL HDIDAAIESF KNVLVLKPND  420
AGIKKDLVAA RKKVVSNTHS RSQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xi4_H1e-8484349361649Clathrin heavy chain
1xi4_I1e-8484349361649Clathrin heavy chain
1xi5_A1e-8484349361649Clathrin heavy chain
1xi5_B1e-8484349361649Clathrin heavy chain
1xi5_C1e-8484349361649Clathrin heavy chain
1xi5_D1e-8484349361649Clathrin heavy chain
1xi5_E1e-8484349361649Clathrin heavy chain
1xi5_F1e-8484349361649Clathrin heavy chain
1xi5_G1e-8484349361649Clathrin heavy chain
1xi5_H1e-8484349361649Clathrin heavy chain
1xi5_I1e-8484349361649Clathrin heavy chain
3iyv_A1e-8484349361649Clathrin heavy chain
3iyv_B1e-8484349361649Clathrin heavy chain
3iyv_C1e-8484349361649Clathrin heavy chain
3iyv_D1e-8484349361649Clathrin heavy chain
3iyv_E1e-8484349361649Clathrin heavy chain
3iyv_F1e-8484349361649Clathrin heavy chain
3iyv_G1e-8484349361649Clathrin heavy chain
3iyv_H1e-8484349361649Clathrin heavy chain
3iyv_I1e-8484349361649Clathrin heavy chain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtClathrin is the major protein of the polyhedral coat of coated pits and vesicles (By similarity). Mediates endocytosis and is required for a correct polar distribution of PIN auxin transporters. {ECO:0000250, ECO:0000269|PubMed:21551390}.
UniProtClathrin is the major protein of the polyhedral coat of coated pits and vesicles (By similarity). Mediates endocytosis and is required for a correct polar distribution of PIN auxin transporters. {ECO:0000250, ECO:0000269|PubMed:21551390}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0P3IP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9175230.0KF917523.1 Lotus japonicus clathrin heavy chain protein 2 (CHC2) mRNA, complete cds.
GenBankKJ1843060.0KJ184306.1 Lotus japonicus clathrin heavy chain 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015931279.11e-165clathrin heavy chain 2 isoform X1
RefseqXP_022015122.11e-170clathrin heavy chain 1-like
SwissprotQ0WLB51e-162CLAH2_ARATH; Clathrin heavy chain 2
SwissprotQ0WNJ61e-162CLAH1_ARATH; Clathrin heavy chain 1
TrEMBLA0A078HHP71e-169A0A078HHP7_BRANA; BnaA01g31000D protein
STRINGONIVA12G00390.11e-169(Oryza nivara)
STRINGTraes_5AL_07951DCB6.11e-169(Triticum aestivum)
STRINGTraes_5BL_EF07069FC.21e-169(Triticum aestivum)
STRINGTraes_5DL_25FA5CCA4.21e-169(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.16e-25AGAMOUS-like 16
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]
  2. Andersson MX,Sandelius AS
    A chloroplast-localized vesicular transport system: a bio-informatics approach.
    BMC Genomics, 2004. 5(1): p. 40
    [PMID:15236667]
  3. Song J,Lee MH,Lee GJ,Yoo CM,Hwang I
    Arabidopsis EPSIN1 plays an important role in vacuolar trafficking of soluble cargo proteins in plant cells via interactions with clathrin, AP-1, VTI11, and VSR1.
    Plant Cell, 2006. 18(9): p. 2258-74
    [PMID:16905657]
  4. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]
  5. Van Damme D, et al.
    Adaptin-like protein TPLATE and clathrin recruitment during plant somatic cytokinesis occurs via two distinct pathways.
    Proc. Natl. Acad. Sci. U.S.A., 2011. 108(2): p. 615-20
    [PMID:21187379]
  6. Kitakura S, et al.
    Clathrin mediates endocytosis and polar distribution of PIN auxin transporters in Arabidopsis.
    Plant Cell, 2011. 23(5): p. 1920-31
    [PMID:21551390]
  7. Roberts D, et al.
    Modulation of phototropic responsiveness in Arabidopsis through ubiquitination of phototropin 1 by the CUL3-Ring E3 ubiquitin ligase CRL3(NPH3).
    Plant Cell, 2011. 23(10): p. 3627-40
    [PMID:21990941]
  8. McLoughlin F, et al.
    Identification of novel candidate phosphatidic acid-binding proteins involved in the salt-stress response of Arabidopsis thaliana roots.
    Biochem. J., 2013. 450(3): p. 573-81
    [PMID:23323832]
  9. Ueoka-Nakanishi H, et al.
    Thioredoxin h regulates calcium dependent protein kinases in plasma membranes.
    FEBS J., 2013. 280(14): p. 3220-31
    [PMID:23615222]
  10. Sauer M, et al.
    MTV1 and MTV4 encode plant-specific ENTH and ARF GAP proteins that mediate clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network.
    Plant Cell, 2013. 25(6): p. 2217-35
    [PMID:23771894]
  11. Zeng MH, et al.
    Characterization of a gene encoding clathrin heavy chain in maize up-regulated by salicylic acid, abscisic acid and high boron supply.
    Int J Mol Sci, 2013. 14(7): p. 15179-98
    [PMID:23880865]
  12. Wu G, et al.
    ENHANCED DISEASE RESISTANCE4 associates with CLATHRIN HEAVY CHAIN2 and modulates plant immunity by regulating relocation of EDR1 in Arabidopsis.
    Plant Cell, 2015. 27(3): p. 857-73
    [PMID:25747881]
  13. Jung JY,Lee DW,Ryu SB,Hwang I,Schachtman DP
    SCYL2 Genes Are Involved in Clathrin-Mediated Vesicle Trafficking and Essential for Plant Growth.
    Plant Physiol., 2017. 175(1): p. 194-209
    [PMID:28751315]
  14. Larson ER,Van Zelm E,Roux C,Marion-Poll A,Blatt MR
    Clathrin Heavy Chain Subunits Coordinate Endo- and Exocytic Traffic and Affect Stomatal Movement.
    Plant Physiol., 2017. 175(2): p. 708-720
    [PMID:28830938]
  15. Adamowski M, et al.
    A Functional Study of AUXILIN-LIKE1 and 2, Two Putative Clathrin Uncoating Factors in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 700-716
    [PMID:29511054]