PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0Q0IR
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 108aa    MW: 12160 Da    PI: 10.8473
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0Q0IRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.89.8e-151187181
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkl 81
                 kfY++YAk +GFs+r+++++++   +ei+++  +Cs++gk +++ +    +++t+++   +C a++ ++  k  g w +++l
  Araip.0Q0IR 11 KFYKNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSRKGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIIQRL 87
                 6****************98887..8889*************998877...8999**************998879****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-121187IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MTFTTLEDAG KFYKNYAKAA GFSTRVRSTN RKGNEIKNQL ITCSRKGKWK SKISPTEKTN  60
PTAGLNCPAR IYIHTLKDVG AWIIQRLCWI IHTPAVQVKQ RCSNSTGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0Q0IR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-152HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997160.15e-54protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020997362.15e-54protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444ZP799e-68A0A444ZP79_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.29e-08FAR1-related sequence 4