PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.0S7S3

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 451aa MW: 51338 Da PI: 7.2409

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.0S7S3	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.3	8e-16	76	163	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +YAk+vGF ++++++ +++++ +++ C++eg+r + k+ r+++ +gC+a++ k ++ ++ w++ k+el+H+H+++ Araip.0S7S3 76 DFYATYAKKVGFISKIRATNLDRMTKQPINQSIHCNREGFRGSPVKA---PIRKNTMVGVGCRARIYAKFDRkKHDWVLLKVELNHSHPCS 163 6****************************************9998...88899999*******9998999**********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-13	76	163	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MLGSVPACSP RPPPITAILM EHNSVEPSCL VPDSFTGDSF DGESEQLDKL QDHSCLADDE 60 ILRVGMRFEH LKLAQDFYAT YAKKVGFISK IRATNLDRMT KQPINQSIHC NREGFRGSPV 120 KAPIRKNTMV GVGCRARIYA KFDRKKHDWV LLKVELNHSH PCSTKKAVHY HENRELTMHA 180 KCIIEGQFWA PMRSMQRSEG MHSFFGGYLN CKTSLVQFVH EFDNVLGTKE QKELEDDAAY 240 SRGLIPCSTR SVIERRFQKE YTNEMFRDVQ TEFGKKADCT IRAVDEQVLS SYKVNEVPSC 300 YVLPRWRKNI KRKHTYIKSS HDVRRSDESH NIFRGLCAHF YNVAQEFVDC DDEADMLYNV 360 LDDARAKLVD YHGRMRNNIV PTAHNSIATD PSTVFGTEDI QAPSKESGRV YATYDNCVES 420 TANQDSEASA QQIAMQGLGG FMSLLNSFDN T

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MLGSVPACSP RPPPITAILM EHNSVEPSCL VPDSFTGDSF DGESEQLDKL QDHSCLADDE  60
ILRVGMRFEH LKLAQDFYAT YAKKVGFISK IRATNLDRMT KQPINQSIHC NREGFRGSPV  120
KAPIRKNTMV GVGCRARIYA KFDRKKHDWV LLKVELNHSH PCSTKKAVHY HENRELTMHA  180
KCIIEGQFWA PMRSMQRSEG MHSFFGGYLN CKTSLVQFVH EFDNVLGTKE QKELEDDAAY  240
SRGLIPCSTR SVIERRFQKE YTNEMFRDVQ TEFGKKADCT IRAVDEQVLS SYKVNEVPSC  300
YVLPRWRKNI KRKHTYIKSS HDVRRSDESH NIFRGLCAHF YNVAQEFVDC DDEADMLYNV  360
LDDARAKLVD YHGRMRNNIV PTAHNSIATD PSTVFGTEDI QAPSKESGRV YATYDNCVES  420
TANQDSEASA QQIAMQGLGG FMSLLNSFDN T

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.0S7S3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016206960.2	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445AS87	0.0	A0A445AS87_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23367	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-11	FAR1 family protein