PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0U6EA
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 197aa    MW: 22733.3 Da    PI: 4.8195
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0U6EAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.91.9e-09150191143
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43 
                  +fY++Y++  GF ++++k+ k+ r+g+i+++t++C++eg+r++
  Araip.0U6EA 150 RFYEQYSRAKGFAMQQRKKMKN-RKGQIVRYTYMCNREGFRHR 191
                  5****************99998.6777*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-7150191IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MRRSSVGLFS SEGVRSFCVE GGMTYFSEDQ SGMPVKDKVI LLNGFARYRV SGEVGAAEAR  60
QNIFLMSSCS RTIHELDADD EENFNVSEDS ENCDTMETPV DTWMETEAEE LEGESPDERH  120
GEQNGSTEHV MLSRAQILEM DFANPDEACR FYEQYSRAKG FAMQQRKKMK NRKGQIVRYT  180
YMCNREGFRH RKWLVRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171RKKMKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0U6EA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020963585.12e-75protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A444XXS61e-125A0A444XXS6_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9185237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-06FAR1-related sequence 12