PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0Z6G1
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 727aa    MW: 81921.9 Da    PI: 7.417
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0Z6G1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.9e-085072326
                 S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                 t++Cr+fa  G C++G+ C+F H+
  Araip.0Z6G1 50 TRPCRDFAV-GNCRRGSHCHFLHD 72
                 89*******.*************7 PP
2zf-CCCH18.34e-06175195526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f+++G C+ G +C+F+H+
  Araip.0Z6G1 175 PCK-FFAFGNCRNGKNCRFSHD 195
                  799.8888*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.3664774IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-54973IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-55072IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-65073IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.183107134IPR000571Zinc finger, CCCH-type
SMARTSM003560.58108133IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4170196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6173195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709175197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MSEPGRKHSS RRDLRDDAEF ASSRSRSPAC DFRWDSEVSD RKRMRSGGST RPCRDFAVGN  60
CRRGSHCHFL HDDNQNYDDG WESRSRQDRA LRYSAPHEGG DYSLRSGRSN DACINFAKGW  120
CRMGASCKYV HHHDNGFREI SIAESTRERE IDRRHMESSY EWDGAHRPNH SGDIPCKFFA  180
FGNCRNGKNC RFSHDSQAFQ RPNRSLRDDR TSYYGEHEAL DIQKLNDSIS PNGRLRDDRC  240
GFKSNMADVD EAWDGPEKND LGAVVDTENL VEDNTNRISG ATKPSFTHRP MNDVLDCRLD  300
KGRVHAQSPF PSVKNDTNYW ETQKAGDNMR STQSINTVIW PGDEKMSPDW KFGVGSFCGT  360
EEKHEQNKQE VTPGQRFNQN AQNLNASSCQ VVGQSQMPVS VAASRVGIVE GMQNQEINVE  420
KKYTAEPNIM EAILSQISSR DPLSQNMVSK ERLAQLTSIS ATLAHIIGSA KQLPQLNATS  480
NSHDARDTPL LGKSEGSYSN NKPVFTFAKS DPAIGSQKQY DPICDSIETK DAHANGVPPY  540
FSPIVKVINE VEEIPAPSSK STRQNLDYSR KTAFPEGPLV KCDHSIQLQQ QGENIEINKE  600
KDVVIAEEKQ SLQCAKEITK ENIPMENMDQ TGGTDEAKKT KDDKGVRAFK YSLVEFVKEL  660
LKPTWKEGQI TKEDYKSIVK KVADKVVGTV QRAHIPQTQE KIDHYLSLSK PKLNKLLQAY  720
VEKAQKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0Z6G1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189766.10.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLA0A371E8B70.0A0A371E8B7_MUCPR; Zinc finger CCCH domain-containing protein 38 (Fragment)
STRINGXP_007137708.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-13C3H family protein