PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.108MH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 690aa    MW: 77408.6 Da    PI: 7.1253
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.108MHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.32.2e-21131231299
                  EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                   k+lt+sd+++ g + +p+ +a+ +      + +k+ ++tl+++d++g++We+++ yr++++r++lt+GW++Fv++++L  gD+++F+  ++s+++ +
  Araip.108MH 131 AKILTRSDANNGGAFLVPRLCADLIlpplnfE-EKRPGQTLSITDLHGNVWEFRHGYRGRPKRHLLTAGWSKFVDSKKLIYGDTLIFM--KDSDGKIF 225
                  5999****************99888****963.455667*************************************************..779999** PP

                  EEEE-S CS
           B3  94 vkvfrk 99 
                  v+++r+
  Araip.108MH 226 VGLRRN 231
                  **9986 PP
2Auxin_resp707.5e-24280365183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl.sGtvvgvsd.ldpvrWpnSkWrsLk 83 
                  a++ a+++++Fev+Y+P++++ eF+vk+e+ve+ ++ v +svG R+kma e+ dss+ ++ +Gtv+g+s  +d   W+ S+Wr+L+
  Araip.108MH 280 AMELAAQNKPFEVIYYPSVGWEEFIVKAEDVETKMNdVLYSVGKRVKMARENYDSSQMTWfQGTVSGISVpADDQPWSSSPWRMLQ 365
                  678899*****************************98999****************************97478899********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-30125234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-25126230IPR015300DNA-binding pseudobarrel domain
CDDcd100174.78E-17129230No hitNo description
SMARTSM010191.5E-12130232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943130232IPR003340B3 DNA binding domain
PfamPF023624.0E-18131231IPR003340B3 DNA binding domain
PfamPF065071.6E-21280365IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MPRLRRSSPT LSTSPSSPTP IPAKFWRACA GISARAPVMN SKVYYFPQGH IDQAASKPRN  60
LSSLVYARPV IPCRVSAVNF FADRNTDEVF LKILLHPVTD GSAQDFFPPA GAAEGSGGNG  120
NGDDEKVESY AKILTRSDAN NGGAFLVPRL CADLILPPLN FEEKRPGQTL SITDLHGNVW  180
EFRHGYRGRP KRHLLTAGWS KFVDSKKLIY GDTLIFMKDS DGKIFVGLRR NMSPDEDGLD  240
WLSAASVGMD ELEKEEEEVM TEGFARNGKG RVTSASVAEA MELAAQNKPF EVIYYPSVGW  300
EEFIVKAEDV ETKMNDVLYS VGKRVKMARE NYDSSQMTWF QGTVSGISVP ADDQPWSSSP  360
WRMLQVTWDD HDEILKNANS VSPWQVEILS ALPSTPAAFP PTKKLRVTNR EEESSLSIPR  420
FSSPNSAMVL FKEALLSYYG KTSPAAMQGA RHDVSSAPIC SIFASNNSPT FMDNSLGNNI  480
VVPRTDTILT EQPNSNSAKS GHSTTVSFQL FGHTIRLEQP AEIGDHNRDD NNRDIDNPVQ  540
QTLTCTNLLH YLDDGEYLRK NKMIPDPFIR KRDCSSPIFI ISRITLTFIL SFFTFTVFFS  600
IFSFLLFTSK IKPWCNCHTC RTYLNISWTT HFLNLCDWYI HLLCTSPTKS IHFHVFDNIT  660
SNSDNVHDIL KTKFHNYYKG TPFSTLRQAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-542138751388Auxin response factor 5
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.108MH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016165234.10.0auxin response factor 17-like
TrEMBLA0A445EAZ30.0A0A445EAZ3_ARAHY; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-113auxin response factor 17