PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.13WJ1
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 222aa    MW: 24050.2 Da    PI: 9.7048
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.13WJ1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-15114159247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++W++eE+ +++++ ++lG+g+W+ I+r++  +Rt+ q+ s+ qky
      Araip.13WJ1 114 LAWSEEEHRIFLEGLEKLGKGNWRGISRCFVRTRTPTQVASHAQKY 159
                      68*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.6971530IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.076108164IPR017930Myb domain
TIGRFAMsTIGR015577.2E-17111162IPR006447Myb domain, plants
SuperFamilySSF466892.15E-16111164IPR009057Homeodomain-like
SMARTSM007173.4E-11112162IPR001005SANT/Myb domain
CDDcd001674.26E-11115160No hitNo description
Gene3DG3DSA:1.10.10.605.1E-11115159IPR009057Homeodomain-like
PfamPF002491.2E-12115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MCGRIIIIII IIMARKCTYC GNSGHNSRTC NHSFSSTTGG SSGIKLFGVQ LDDNQYSSSS  60
CMDYLLSLSA AASLSSSSLV GANKNSHEIS YSYLTAGASS SGLMSTIKDN NKGLAWSEEE  120
HRIFLEGLEK LGKGNWRGIS RCFVRTRTPT QVASHAQKYF LRRNTFRSRK HRLTLANEGT  180
RNSDAVVLSH WLASATSTNC TSIQSAAAPD LELKLATPSP SL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.13WJ1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016165324.11e-153transcription factor MYBS3
RefseqXP_025665796.11e-153transcription factor MYBS3-like
TrEMBLA0A445C8J11e-152A0A445C8J1_ARAHY; Uncharacterized protein
STRINGGLYMA06G05450.29e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151421013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-36MYB_related family protein