PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.15TR9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 126aa    MW: 14303.1 Da    PI: 8.6722
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.15TR9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.56.5e-1151125179
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevt 79 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+e k +++ +    +++t+++t  +  a++ ++  k  g w ++
  Araip.15TR9  51 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREKKWKSKISP---TEKTNSTTGLNYPARIYIHTLKnVGAWIIS 125
                  6****************98887..8889**********999998776...889999999999*****9988778999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-851125IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPEPLSI VDDQFVPKVG MTFTILEDAG KFYRNYAKAA  60
GFSTRVRSTN RKGNEIKNQL ITCSREKKWK SKISPTEKTN STTGLNYPAR IYIHTLKNVG  120
AWIISK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.15TR9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-123HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020992539.14e-76protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020997160.12e-76protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020997362.19e-76protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444YPX99e-83A0A444YPX9_ARAHY; Uncharacterized protein
TrEMBLA0A444YSY62e-80A0A444YSY6_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-07FAR1 family protein