PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.16HZH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 342aa    MW: 39147.7 Da    PI: 6.7051
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.16HZHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.53e-0738602446
                 HHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF 24 AeELSvLCdaevaviifsstgkl 46
                 A+EL +LCdaev v+ifsst+ +
  Araip.16HZH 38 AKELVILCDAEVGVMIFSSTNSM 60
                 99******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.8163767IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-63879IPR002100Transcription factor, MADS-box
PfamPF003191.7E-53860IPR002100Transcription factor, MADS-box
CDDcd000437.46E-10164256No hitNo description
SMARTSM003858.2E-12170257IPR013763Cyclin-like
SMARTSM013326.1E-22172287IPR004367Cyclin, C-terminal domain
Gene3DG3DSA:1.10.472.106.5E-29173279IPR013763Cyclin-like
SuperFamilySSF479548.5E-27176279IPR013763Cyclin-like
PfamPF029841.3E-25177279IPR004367Cyclin, C-terminal domain
SuperFamilySSF478191.7E-6272327IPR010997HRDC-like
PfamPF038748.8E-8274327IPR005574RNA polymerase II, Rpb4
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVILDRGVRV LIESDGERED RDKEDRQFHE QASDVLEAKE LVILCDAEVG VMIFSSTNSM  60
ISPVPDGEST HQEDYRGKHH LVATNEMKFC LDASPKQKLI SKEFKRGTFS ACRWDANQMV  120
LVLVGFALGL QKEEELLNSK DLSKVHAHVI HEIFHRRIES SFLSYTFVID MLARFAFHLR  180
FSKVAQERKD FLTSYLAELS LLDYNCVKFL PSLVAASVVF LARFMPSPKT HPWNAALYQL  240
TRYKPAELQE CAQSIHDLYL SRRGGSLQAV REKYKQHKVY DYLIDTAARD QTRERINEFL  300
KVHDLAKAEI LNIINIRPTN IVEIPSLEEL GSRSSGASNN EA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.16HZH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-