PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.187W4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 283aa    MW: 31839.5 Da    PI: 5.674
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.187W4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-202978255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Araip.187W4 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                 69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-312888No hitNo description
SuperFamilySSF541712.42E-212987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-302987IPR001471AP2/ERF domain
SMARTSM003802.3E-382992IPR001471AP2/ERF domain
PfamPF008472.5E-132978IPR001471AP2/ERF domain
PROSITE profilePS5103222.7482986IPR001471AP2/ERF domain
PRINTSPR003672.2E-103041IPR001471AP2/ERF domain
PRINTSPR003672.2E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDTTKKSPLK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AYLNLPHLKP SSNFPIKSGK FKWMPSKNFI SMFPSCGLLN  120
VNAQPSVHLI HQRLQQFKQN GVVNQSPSSS NDPKGETQSV KESKVDAEED PPEEKNTRAS  180
SEAMLGDLHE KPQIDLHEFL QQMGILKAEI QEERTDSSGS STVPEAASCD DYAQLGLFSD  240
NSVNWEELIG MHGIADFPEA ESTQLEAHET NYELDFYSSI WNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-173086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.187W4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204969.10.0dehydration-responsive element-binding protein 2F
RefseqXP_025661106.10.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX52e-83DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A444YHI20.0A0A444YHI2_ARAHY; Uncharacterized protein
STRINGGLYMA19G32380.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.18e-74ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]