PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1A32N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 573aa    MW: 60272.7 Da    PI: 7.569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1A32NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.3e-124570227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C +++rtG+C yG+rC+F+H++
  Araip.1A32N 45 DEADCIYYLRTGFCGYGSRCRFNHPR 70
                 6799********************96 PP
2zf-CCCH406.7e-1393117327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++lC+++++tG Ck+G++Ck++H++
  Araip.1A32N  93 QPLCQYYMKTGSCKFGSSCKYNHPR 117
                  79*********************96 PP
3zf-CCCH33.57.2e-11138163227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++ +tG Ck+G++CkF+H++
  Araip.1A32N 138 GEKECSYYVKTGRCKFGGTCKFHHPQ 163
                  7899********************97 PP
4zf-CCCH33.95.4e-11313338227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tG+Ck+G+ C+++H+p
  Araip.1A32N 313 DQPECQHYLKTGECKFGPLCRYHHPP 338
                  689*********************97 PP
5zf-CCCH283.7e-09440463427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C ++ + G Ck+G+ C+F H++
  Araip.1A32N 440 SPCTHYTQRGVCKFGSACRFDHPM 463
                  69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-54370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2954371IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-94570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-64572IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-54970IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-790117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.99590118IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-1093117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-695117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784136164IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-5136163IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8138163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6138164IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.957311339IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8313338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5315339IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021436463IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432436464IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6440463IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5440466IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-5441461IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MERYGRSSEG SRSDPSPEWT GTGLEEPVWQ MGLGAAEESY PQRPDEADCI YYLRTGFCGY  60
GSRCRFNHPR DRAAAVGAAA RTGGGEYPER IGQPLCQYYM KTGSCKFGSS CKYNHPRQAG  120
GSASPVSLNY YGYPLRPGEK ECSYYVKTGR CKFGGTCKFH HPQPAGIQVP ASSLVPPVSP  180
LPVPVPSPLY QSVQPPSGPS SQQIGVLVAR PPLLPGSLVH SPYGPVVLSP AMVPFSGWGP  240
YQLLTVELFA QAPAASPVLP SSTPSNVGSA QLYGITQVPS SPAAYAGPYQ PSGSSLGLSG  300
SSQKEQSLPE RPDQPECQHY LKTGECKFGP LCRYHHPPDM SAPKGNVILS PAGLPLRPEC  360
HFGIGFTVNE WNSLDVVLGI SPINVLFMKG YFNPNVLPKV LAIEVHSGDL NLSEGNIIMN  420
ERGGGGGMSS SEFREKGGAS PCTHYTQRGV CKFGSACRFD HPMGSLSYSP STSSLADMPV  480
APYPVGSSVG TLALSSSTSE LRPELTLGSI KESVSSRIPS SMNTLTGSVG LTLSTGEPVS  540
QSSSQPSAQS SSTSAAADTA TTSTVSCTTS SSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1A32N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022643038.10.0zinc finger CCCH domain-containing protein 34 isoform X1
RefseqXP_025681243.10.0zinc finger CCCH domain-containing protein 34 isoform X2
SwissprotQ6NPN31e-122C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A444WWR30.0A0A444WWR3_ARAHY; Uncharacterized protein
STRINGAES918200.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-101C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]