PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1A9I8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 378aa    MW: 44205.9 Da    PI: 7.9608
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1A9I8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-16174220148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W+++Ed ll d+v+++G ++W+ Ia  +  gR +kqc++rw+++l
      Araip.1A9I8 174 KGQWSADEDRLLTDLVELFGFKNWSYIATLVS-GRIGKQCRERWFNHL 220
                      799*****************************.*************97 PP
2Myb_DNA-binding56.28e-18226268145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W +eEd+ll++a+kq G++ W+ Iar+++ gRt++ +k++w+
      Araip.1A9I8 226 KDSWDEEEDKLLIEAHKQVGNK-WAEIARRLP-GRTENTIKNHWN 268
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.606169220IPR017930Myb domain
SuperFamilySSF466892.58E-30172267IPR009057Homeodomain-like
SMARTSM007172.7E-13173222IPR001005SANT/Myb domain
PfamPF002491.4E-14174220IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-26175227IPR009057Homeodomain-like
CDDcd001671.28E-11177220No hitNo description
PROSITE profilePS5129426.092221275IPR017930Myb domain
SMARTSM007178.0E-16225273IPR001005SANT/Myb domain
PfamPF002491.1E-15226268IPR001005SANT/Myb domain
CDDcd001675.19E-12228268No hitNo description
Gene3DG3DSA:1.10.10.608.2E-22228274IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEFDQNFFED FTYLSESIYE NPCIKKEIST TVPMQQKSLL VCPPLKNEIL YKNDFHHLQS  60
LKDITNTFYS MEIAPNKNQM EDIHAFPNNY NSLWDLSQKN QVQIDDALTP SLIYDASLLV  120
PMNLNFQDEL STLTPTENAY WNNNQNPFHN NQIPQRRGLR RKDNIQQSVT EIIKGQWSAD  180
EDRLLTDLVE LFGFKNWSYI ATLVSGRIGK QCRERWFNHL RPDIKKDSWD EEEDKLLIEA  240
HKQVGNKWAE IARRLPGRTE NTIKNHWNAA KRKKSSKRQP RKKKNQTYYF GETLLQRYVK  300
EVTAADAAKK QLKKSMKKLR ITNEDYNLQQ NACITGYDGN IPVKFSSNEI GNGSVLIDGT  360
ENYVPMQLDM IGIETYMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-411712741104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1A9I8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207047.20.0transcription factor MYB98-like
RefseqXP_025657441.10.0transcription factor MYB98-like
TrEMBLA0A444YTB50.0A0A444YTB5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-49myb domain protein 118