PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1BW4F
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 575aa    MW: 63177.1 Da    PI: 7.0549
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1BW4FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.21.9e-14108146241
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C++C+N+ +
  Araip.1BW4F 108 KSKQCNCKNSRCLKLYCECFASGMYCDG-CNCTNCQNNVD 146
                  789*************************.********986 PP
2TCR513e-16192231140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Araip.1BW4F 192 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 231
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-15107147IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.463108232IPR005172CRC domain
PfamPF036384.8E-11110144IPR005172CRC domain
SMARTSM011148.4E-20192233IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12195230IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MEQSETALDL APKLAVGFHS TPETGADSAA AVAGRGDSAN AITITGQQLR VPPQSPAVRQ  60
QKLSPVPRIP YTVQKLPVKA FKVSKQESPS PRSQPWYNVE LKDSTPKKSK QCNCKNSRCL  120
KLYCECFASG MYCDGCNCTN CQNNVDNEAA RQEAVGLTLE RNPNALRPKI ASSPQETRDS  180
KEDVSEIQLV GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNF EGSNERRASF  240
HEECNMFRIK QEANAAISGA VGFSGYGTGI AITPKKRKIQ EIFSSKSSID KTVCQTTQYQ  300
QETDPIVTPP TSQSTFFYVD TANTRNSGYS RSTYRSPLAD VLQPQNVKNL CSLFVVLSGV  360
AAKTNAEMRA KVGQNVDAGK FKSSIPSSTQ LLQDREDVCK FVCDNCKDEV DRVDIDCYNR  420
PLSPETLSLM CDEQDEVFFD NGSANRVACN NFQSIVQNSS TSDRCPDVYE EQERVVLTKF  480
WDVLRGLITV GSIKETMCSS LAKKDGGSEE ELAANSNGAE VDIGSEKKET PSNCVARCPI  540
SSSAIEISQK KHAMIDGNGD LDLSLRFACQ FYGRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-291002412132Protein lin-54 homolog
5fd3_B2e-291002412132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1BW4F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181011.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-125TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A444X6Z00.0A0A444X6Z0_ARAHY; Uncharacterized protein
STRINGGLYMA04G08670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151511113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-128Tesmin/TSO1-like CXC domain-containing protein