PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.1D00K

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YA

Protein Properties

Length: 212aa MW: 23334.2 Da PI: 9.7491

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.1D00K	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.6	8.7e-33	75	131	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRh+hAl+R RgsgGrF Araip.1D00K 75 DGPVYVNAKQYHGILRRRQSRAKLEAQNKL-IKNRKPYLHESRHRHALNRVRGSGGRF 131 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.0E-37	73	134	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.949	74	134	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.5E-28	77	131	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.8E-25	77	99	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	79	99	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	8.8E-25	108	131	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MKPFLSLNYP DTAFDCAQIE CDYSMAHGSY PYEDPFFAGS LIAYGPQGIN QPQMLPQMLG 60 LQSTRVALPL DLAEDGPVYV NAKQYHGILR RRQSRAKLEA QNKLIKNRKP YLHESRHRHA 120 LNRVRGSGGR FLSTKQFEQS NAEVVTGAHS SSDTSKDASK VESHLLRTAG NASSITTCSD 180 RTSLSSNSVS RQPEAQLFLA GPANLGRAPV VR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-23	75	136	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.1D00K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016189121.1	1e-158	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_016189122.1	1e-158	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_016189123.1	1e-158	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_025644473.1	1e-158	nuclear transcription factor Y subunit A-7 isoform X2
Refseq	XP_025644474.1	1e-158	nuclear transcription factor Y subunit A-7 isoform X2
Refseq	XP_025644475.1	1e-158	nuclear transcription factor Y subunit A-7 isoform X2
TrEMBL	A0A445A1Q7	1e-156	A0A445A1Q7_ARAHY; Uncharacterized protein
STRING	GLYMA09G07960.4	1e-99	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6949	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-40	nuclear factor Y, subunit A3