PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.1I15S

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

YABBY

Protein Properties

Length: 70aa MW: 7638.76 Da PI: 3.8834

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.1I15S	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	80.2	6.1e-25	6	64	3	61
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61 ++ +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ Araip.1I15S 6 MDAGPEQLCYIPCNFCNIVLAVSVPCSSLFDMVTVRCGHCTNLWSVNMAAAFQSLSWQD 64 56679********************************************9999988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.5E-26	10	66	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MSSCSMDAGP EQLCYIPCNF CNIVLAVSVP CSSLFDMVTV RCGHCTNLWS VNMAAAFQSL 60 SWQDLQDPNS

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.1I15S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025673956.1	1e-43	axial regulator YABBY 5 isoform X1
Swissprot	Q8GW46	1e-30	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A444Y3J4	4e-42	A0A444Y3J4_ARAHY; Uncharacterized protein
TrEMBL	A0A445AW85	4e-42	A0A445AW85_ARAHY; Uncharacterized protein
STRING	GLYMA17G12200.1	2e-39	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	6e-33	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]