PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.1J7W2

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 370aa MW: 43385.4 Da PI: 8.7466

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.1J7W2	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.3	4e-16	27	112	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++Y+k +GFs+++++++ ++i+++ vCs+eg+ +++ + + +t+++ +C ak+ v+ +k g w ++k++l+H+H+++ Araip.1J7W2 27 KFYKHYSKLAGFSTKIRNTTWD--GDKIKNQLIVCSREGRWKSKISP---TLKTNPSAGLNCPAKIYVHIMKdVGLWTISKVVLNHSHPCC 112 6*************997776..78899*******9998777...999**************999************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-13	27	112	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MQTNCVVDEK FVPKVGMIFK TLEEAGKFYK HYSKLAGFST KIRNTTWDGD KIKNQLIVCS 60 REGRWKSKIS PTLKTNPSAG LNCPAKIYVH IMKDVGLWTI SKVVLNHSHP CCSDQDEILK 120 QHRELSMFVR RTIETHEEAR IRPSKTYQSF VAAAGSHREL ELYEDRHIWI PVYLDHHFWA 180 EMRSTQRSES MHSFFNKEQA EREFDAADFH TVIPCATKSV IEAQFQHVYT HEKFKEVQAQ 240 FRGKVNCITR SMYSTLGFTT YEVIEQVSNS KFNKFVVSYE QYHEMGILCR HSLSVLSFER 300 VDNVAPKYIL ERWSKNIKRR HTHIKSSQDE PLLESRSKRF DKLVFWSHNI CEFASESEEL 360 TGILHQAFDK

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MQTNCVVDEK FVPKVGMIFK TLEEAGKFYK HYSKLAGFST KIRNTTWDGD KIKNQLIVCS  60
REGRWKSKIS PTLKTNPSAG LNCPAKIYVH IMKDVGLWTI SKVVLNHSHP CCSDQDEILK  120
QHRELSMFVR RTIETHEEAR IRPSKTYQSF VAAAGSHREL ELYEDRHIWI PVYLDHHFWA  180
EMRSTQRSES MHSFFNKEQA EREFDAADFH TVIPCATKSV IEAQFQHVYT HEKFKEVQAQ  240
FRGKVNCITR SMYSTLGFTT YEVIEQVSNS KFNKFVVSYE QYHEMGILCR HSLSVLSFER  300
VDNVAPKYIL ERWSKNIKRR HTHIKSSQDE PLLESRSKRF DKLVFWSHNI CEFASESEEL  360
TGILHQAFDK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.1J7W2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960283.1	1e-155	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A445B036	0.0	A0A445B036_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-17	FAR1 family protein