PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.1MH74

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

M-type_MADS

Protein Properties

Length: 112aa MW: 13207.2 Da PI: 10.5663

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.1MH74	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.5	6.3e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk nrqvtfskRrng+lKKA+ELSvLCdaeva++ifs++gklye+ss Araip.1MH74 9 KRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALMIFSNRGKLYEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.053	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.6E-41	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.09E-33	2	80	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.83E-43	2	76	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-32	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MGRGKVVLKR IENKVNRQVT FSKRRNGLLK KAYELSVLCD AEVALMIFSN RGKLYEFSSS 60 SSMMKTIERY HMHKYSLPQT TQVRNHDTQP QNTYQDYVTL KAYVELLQRS QR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-20	1	83	1	80	MEF2 CHIMERA
6byy_B	1e-20	1	83	1	80	MEF2 CHIMERA
6byy_C	1e-20	1	83	1	80	MEF2 CHIMERA
6byy_D	1e-20	1	83	1	80	MEF2 CHIMERA
6bz1_A	2e-20	1	82	1	79	MEF2 CHIMERA
6bz1_B	2e-20	1	82	1	79	MEF2 CHIMERA
6bz1_C	2e-20	1	82	1	79	MEF2 CHIMERA
6bz1_D	2e-20	1	82	1	79	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269\|PubMed:28528644}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.1MH74

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB623163	1e-46	AB623163.2 Pyrus pyrifolia var. culta PpMADS9-1 mRNA for MADS-box protein, complete cds.
GenBank	AJ001681	1e-46	AJ001681.1 Malus domestica mRNA for MADS box protein MdMADS8.
GenBank	KC415237	1e-46	KC415237.1 Malus domestica cultivar Fuji Beni Shogun MADS8-2 mRNA, complete cds.
GenBank	KC415238	1e-46	KC415238.1 Malus domestica cultivar Fuji Beni Shogun MADS8-1 mRNA, complete cds.
GenBank	KP164002	1e-46	KP164002.1 Pyrus pyrifolia clone PpSEP1-1 SEP1-like MADS-box protein mRNA, complete cds.
GenBank	KP164016	1e-46	KP164016.1 Pyrus pyrifolia clone PpSEP1-2 SEP1-like MADS-box protein mRNA, complete cds.
GenBank	U78947	1e-46	U78947.1 Malus domestica MADS-box protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016178654.2	4e-79	agamous-like MADS-box protein AGL9 homolog
Refseq	XP_025683753.1	2e-77	MADS-box protein CMB1-like
Swissprot	Q7Y040	1e-48	EJ2_SOLLC; MADS-box protein EJ2
TrEMBL	A0A2I0HLA2	6e-52	A0A2I0HLA2_PUNGR; Uncharacterized protein
STRING	GLYMA05G07286.1	2e-49	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	4e-48	MIKC_MADS family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]