PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1N91A
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 357aa    MW: 40795.8 Da    PI: 5.3588
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1N91AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.72.8e-2270129261
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkry 61 
                  W ++e+++Li++rrem+  ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k+ 
  Araip.1N91A  70 WVHEETRTLIALRREMDALFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKES 129
                  ********************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-561128IPR009057Homeodomain-like
PROSITE profilePS500908.73462126IPR017877Myb-like domain
SMARTSM007174.2E-666128IPR001005SANT/Myb domain
CDDcd122035.94E-2768132No hitNo description
PfamPF138376.2E-1669133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MYLSEKPRPI DFYKEESSTR DMIIEVVSNG AADLPPPPSH QQQQMILGDS SGGEDPEVEI  60
KAPKKRAETW VHEETRTLIA LRREMDALFN TSKSNKHLWE QISSKMRDKG FDRSPTMCTD  120
KWRNLLKESK CVQYKSPTPP PPPSSNHKVE SFMQFTDKGI EDTSISFGPV EATGRPTLNL  180
ERRLDHDGHP LAITTAEAVA ASGVPPWNWR ETPGNGEEGQ SCCGRVISVK WGDYTRRIGI  240
DGASEAIKEA IRAAFRLRTK RAFWLEDEDQ IIRSLDRDMP LGNYTLHLDE GMAIKVCLYD  300
ESDHIPVHTE EKIFYTEDDY RDFLTRRGWT SLREFDGYRN IDNMDDLRPG AIYRGVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-3464134171DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1N91A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025691628.10.0trihelix transcription factor GT-4
SwissprotQ9FX531e-175TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A444ZS730.0A0A444ZS73_ARAHY; Uncharacterized protein
STRINGXP_007163722.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-174Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]