PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1P1MT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Dof
Protein Properties Length: 502aa    MW: 54863.8 Da    PI: 6.2483
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1P1MTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1261.2e-39137196261
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s
  Araip.1P1MT 137 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 196
                  7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-31134194IPR003851Zinc finger, Dof-type
PfamPF027014.0E-32139195IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.975141195IPR003851Zinc finger, Dof-type
PROSITE patternPS013610143179IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSEVAKDPAI KLFGKTIPVP EIPTGSGDLT GAPELSSVDD SVDQNNASST NSTSSSDAHE  60
LEEIDNKDTL VNKPDEKKEE VVPLQSSEIV NPDTTSAAGE ESVSPSTEKE AMPLKTSKTE  120
EEQSETSNSQ DKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT  180
MRNVPVGAGR RKNKNSAVHY RQINGPEGAM QNNRKDLPNG VHHPPLMCNG TVLTFGSDAP  240
LCESMASVLN LSEKTAHNYM RNGFAKPEEL RIRVPGAGGE KGDDQSNKSS VSSAKPMGGT  300
TNSNSQEQSI QNGHSFTPQI PYFPGPPWTF PWNPAQWNSS VPPPAFCPPG FAMPFYPATA  360
YWGVSGAWNM PWLAQPSSPN AAATNSGPNS PTLGKHSREE NMFKSNEPGG ENEDKQSKEN  420
HKEKCLWVPK TLRIDDPEEA AKSSIWTTLG IKHDKDDSVL GEGLFKPFPS KYHEKSHPMQ  480
ASPVLQANPA ALSRSLNFRE TS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1P1MT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4516334e-62AM451633.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X095025.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016194291.10.0cyclic dof factor 2
TrEMBLA0A151TC810.0A0A151TC81_CAJCA; Dof zinc finger protein DOF5.2
STRINGXP_007139523.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-107cycling DOF factor 2