PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.1Z0SD

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 381aa MW: 42672.2 Da PI: 7.675

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.1Z0SD	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.1	7.4e-36	47	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tksgy 82 lp+G++F+Ptd+el+ e+L++kve+k+ ++++ i+ +i++++P++Lp v+ + + +fF++ +++y+tg+rk+r+ + + Araip.1Z0SD 47 LPAGVKFDPTDQELI-EHLEAKVEAKRshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSRAYTTGTRKRRKilqndeaeaeRGETR 142 799**********.99***9986654443334666646******.555666799**************8799999886544778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v+ kg+++g+kk+Lv+y g+++k++kt+Wvmh+y+l Araip.1Z0SD 143 WHKTGKTRAVML-KGKQKGCKKILVLYtnFGKNRKPQKTNWVMHQYHL 189 ********.9999******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-38	42	208	IPR003441	NAC domain
PROSITE profile	PS51005	32.812	47	208	IPR003441	NAC domain
Pfam	PF02365	1.3E-16	48	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MNKMDLIDAK LQEEHQLCAS SLKQCPACGH KFEGSSGKKA EWEWVGLPAG VKFDPTDQEL 60 IEHLEAKVEA KRSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSRHF FHRPSRAYTT 120 GTRKRRKILQ NDEAEAERGE TRWHKTGKTR AVMLKGKQKG CKKILVLYTN FGKNRKPQKT 180 NWVMHQYHLG LHEEEKDGEL VVSKIFYQTQ PRQCSWSSSS SSSSITAVAP PVKTNNDTCP 240 VLGFPPMEHF SSFIPLRKTL HNEEVGIGGE TCTPASHIPS SNPVGVFHHN TSIILDDLIS 300 ARFMTPPPPP QFHQQHDNKV VGGTSASGLE ELIMGCTSTS TTHNITKEAS MSNTNPQEAE 360 WLKYSSYWAD PQPQPQPHLH G

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MNKMDLIDAK LQEEHQLCAS SLKQCPACGH KFEGSSGKKA EWEWVGLPAG VKFDPTDQEL  60
IEHLEAKVEA KRSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSRHF FHRPSRAYTT  120
GTRKRRKILQ NDEAEAERGE TRWHKTGKTR AVMLKGKQKG CKKILVLYTN FGKNRKPQKT  180
NWVMHQYHLG LHEEEKDGEL VVSKIFYQTQ PRQCSWSSSS SSSSITAVAP PVKTNNDTCP  240
VLGFPPMEHF SSFIPLRKTL HNEEVGIGGE TCTPASHIPS SNPVGVFHHN TSIILDDLIS  300
ARFMTPPPPP QFHQQHDNKV VGGTSASGLE ELIMGCTSTS TTHNITKEAS MSNTNPQEAE  360
WLKYSSYWAD PQPQPQPHLH G

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.1Z0SD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016188764.1	0.0	NAC domain-containing protein 73-like isoform X2
Refseq	XP_025644019.1	0.0	NAC domain-containing protein 75 isoform X2
Swissprot	Q9M0F8	1e-122	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A445A3G0	0.0	A0A445A3G0_ARAHY; Uncharacterized protein
STRING	XP_004513071.1	1e-145	(Cicer arietinum)
STRING	GLYMA07G15180.4	1e-144	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF29449	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-119	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]