PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.21NA4

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 228aa MW: 25644.9 Da PI: 6.1228

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.21NA4	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.7	1.6e-17	112	199	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +YAk++GF +++++++ k ++ +++ C++ g +e++ k+ r+++ + gCka++ vk +k + w++ k++l H+H+++ Araip.21NA4 112 DFYVTYAKKAGFATKIRTTTFDKITKAPVNQAIHCNRDGIHESRVKA---PMRKNMISAAGCKARIYVKFDKdVQDWVLFKVDLTHSHPCS 199 6*****************************************999...899999**********99899***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-15	112	200	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MAESQEERVS SEGPPLCTSP TRNSLMEVDI AEPLVCVASD VSENLSYEQE YLASDVAGHG 60 HKSNKATQLS DVTNVGSEEM ELGDELLDHG FLQEDEIPRV GMRFAQLQMA HDFYVTYAKK 120 AGFATKIRTT TFDKITKAPV NQAIHCNRDG IHESRVKAPM RKNMISAAGC KARIYVKFDK 180 DVQDWVLFKV DLTHSHPCSP RKAVHYHEYR KLTMHAKYVI EDNDEAGI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.21NA4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016178401.1	1e-146	protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_025685258.1	1e-146	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445AIG7	1e-161	A0A445AIG7_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17976	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-11	FAR1 family protein