PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.25JLZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 307aa    MW: 35236 Da    PI: 5.1709
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.25JLZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.31.2e-13107182172
         FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 
                  ++YneY++  GFsvr+sk  ++     +gei+++ fvCs eg+r+ ++ +  +++  +r+ tr+gC+ ++kv+ ++
  Araip.25JLZ 107 DYYNEYGRIKGFSVRRSKVGRRtkqGAEGEIIWQIFVCSWEGERNGKHMQqGDRKMDPRPITRCGCETRIKVHVDD 182
                  69**************98766643367899**************99888735667779**************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-11107182IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSMTLSYLPF DIMSMEANGF VERSYEFSSN FDRVHALQVV EDGMSGETVP VEEAEAMDLS  60
AVDADIDVEE SVRIVDGIGS FGGIEFSTLT AKDILTTEFI NLQAAYDYYN EYGRIKGFSV  120
RRSKVGRRTK QGAEGEIIWQ IFVCSWEGER NGKHMQQGDR KMDPRPITRC GCETRIKVHV  180
DDTRLKTTSR CEALNMHIGK FIHNGYNLRE FVEHFQHYLE CMRRRELVAD YKSAYGEPIV  240
KTKLEAIEQF AATVYTKEVF ELFREVLMLA SNVRVVFTKR TNACVLFEVA MYCKQRSWAV  300
SSAQEDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.25JLZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192260.13e-92protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025639519.13e-92protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444XY361e-125A0A444XY36_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-09FAR1-related sequence 5