PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.26AUX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 456aa    MW: 52269.9 Da    PI: 8.1793
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.26AUXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.34.4e-1751137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+e k +++ +    +++t+++   +C+a++ ++  k  g w + k++l+H+H+++p
  Araip.26AUX  51 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTAGLNCHARIYIHTLKdVGAWIILKVVLDHSHPCCP 137
                  6****************98887..8889***********99998776...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1451137IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.481271302IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNDSTSDCQL NQGEVDYEFE SNEVPNPLSV VDDQFVSKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRSTN RKGNEIKNQL ITCSREEKWK SKISPTEKTN PTAGLNCHAR IYIHTLKDVG  120
AWIILKVVLD HSHPCCPSKS EMLKQHRELS MSIRRTIENN EEADRHIWVP IYLDHHFWAG  180
MRSTQRSESM HSFFNKFITR NSSLIQFIKQ YDNCLGSREQ AERESDAADF HTVIPCASKS  240
SIEAQEVQAQ FRGKANCITR LTNSALGYSV YEVGAEVKCQ CLLFESRRIL CRHALMSPRY  300
ILERRSKKVK RRHTHIKSNH DEPLLEPRSK RFDQLVFRSQ NICEFTSELE ELTAILHRAY  360
DNVMAEMESL KAKRKGTSSL SHEDANLESV NELQSPQGFE QEDIANATKK KKTKVLSEIN  420
LFDAASVVHS NSSQYQGHVM NYQFRVPAAW DNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.26AUX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-163protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444ZZ110.0A0A444ZZ11_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.26e-18far-red elongated hypocotyls 3