PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.274S3
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WOX
Protein Properties Length: 215aa    MW: 24610.6 Da    PI: 9.2046
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.274S3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.2e-20766357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+++t+eql +Leel+++  r+psa+++++++++l    +++ ++V++WFqN++a++++
  Araip.274S3  7 SRWSPTTEQLMILEELYRSgIRTPSASQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 66
                 7*****************99*************************************996 PP
2Wus_type_Homeobox118.13.9e-38667364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++RW+Pt+eQ++iLeely+sG+rtP++++iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk
        Araip.274S3  6 SSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67
                       79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.592267IPR001356Homeobox domain
SMARTSM003894.2E-4471IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-8766IPR009057Homeodomain-like
SuperFamilySSF466894.28E-11766IPR009057Homeodomain-like
PfamPF000465.9E-18766IPR001356Homeobox domain
CDDcd000862.33E-4867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSPTGSSRWS PTTEQLMILE ELYRSGIRTP SASQIQQITT HLSFYGRIEG KNVFYWFQNH  60
KARDRQKLRR KLNKQLQLQQ QLQLHNVHHF NQDFSNRFLA GFGYPSCSPV TKQVPFYATS  120
GLSFQGGGVA AYASQEGAMN CKCSVHHNSE SLLEKNKEMR FFNNNYGWTL GGDVNHYHES  180
SCCTTTNQPL KTLDLFPVTS TTRIKEDCTK TLDGW
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.274S3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1691821e-60AC169182.2 Medicago truncatula chromosome 7 BAC clone mth2-81g9, complete sequence.
GenBankKM0169101e-60KM016910.1 Medicago truncatula LOOSE-FLOWER (LOOSE-FLOWER) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016195640.11e-163WUSCHEL-related homeobox 3
RefseqXP_025644925.11e-163WUSCHEL-related homeobox 3-like
TrEMBLA0A445DGM11e-161A0A445DGM1_ARAHY; Uncharacterized protein
STRINGGLYMA07G15710.26e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.17e-36WOX family protein