PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.27EE4
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 366aa    MW: 41634.3 Da    PI: 8.1928
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.27EE4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.66.3e-16269351291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fY++YA+ +GF  ++++skk   +g+     + C++  +r ++ ++      t +++ t+C ak++vkk kdgkw++ k++l+HnH+l+p
  Araip.27EE4 269 FYKRYARLIGFGWKIRTSKKG-FDGRPNYVVLACTRGDRRVSSIST------TLPTQFTKCSAKINVKKGKDGKWMIRKVDLDHNHDLSP 351
                  ****************99987.999999*******98777776655......99999******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-13269351IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDLQPETATS SSPTFASIGR RSLKDMSISE LISVLRADFD TVEEVLLARD AKHKAEISPL  60
YEQIELERLT RLRLESELKT KQEGQRCHKC ERTQEGYEML LKEVKKSGLN DYKNNAIIEE  120
LRNKNRELEI QNSKATDELA TIRIRCSELE NARNASLASI EKLRVENCKL RKELNKRVNV  180
LVKDEQDKEF NEMDVCGSTS LQRIKDIGKG QSSSGGLFFK VLDMDSCNNV SGDAAFEAVA  240
EVYSERDDDG HLEPVPRMEF DSLEAVQTFY KRYARLIGFG WKIRTSKKGF DGRPNYVVLA  300
CTRGDRRVSS ISTTLPTQFT KCSAKINVKK GKDGKWMIRK VDLDHNHDLS PLNFKYSGNT  360
TISTLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.27EE4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016202228.10.0uncharacterized protein LOC107643164
RefseqXP_025653944.10.0uncharacterized protein LOC112749776
TrEMBLA0A444Z8580.0A0A444Z858_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2096123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-11FAR1 family protein