PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.2A2GH

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 236aa MW: 26468.4 Da PI: 5.3685

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.2A2GH	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	98	131	19	54
HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +f eL ++l + + ++K +K++iL Av+ +++L Araip.2A2GH 98 RFLELSSILEPgS---MQPKTDKVAILSDAVRVVNQL 131 799******88...9**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.13E-6	97	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-7	98	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd14686	0.0037	147	176	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MILSLRVLLI SSHTSTCCFF SLPLNMDIDS SGGTSNWLYD YGFDNISVAD FMAPDSAAFT 60 WLPQPQPHTN FKPPSSNISL EMEYSVDSIV LEGGPSKRFL ELSSILEPGS MQPKTDKVAI 120 LSDAVRVVNQ LRDEAEKLKE MNDEMLEKIK ELKAEKNELR DEKNRLKVER EKLEQQFKMT 180 NVQPSFLHHA PAATKAQGAS QKLIPFIGYP GIAMWQFMPP AAVDTSKDHL LRPPVA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.2A2GH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025672889.1	1e-171	transcription factor bHLH115
Swissprot	Q9C682	5e-57	BH115_ARATH; Transcription factor bHLH115
TrEMBL	A0A444Y6R3	1e-168	A0A444Y6R3_ARAHY; Uncharacterized protein
STRING	GLYMA13G38140.1	2e-97	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14916	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	2e-59	bHLH family protein

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]