PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.2DF3R

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 175aa MW: 20068.1 Da PI: 9.967

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.2DF3R	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.5	9.2e-13	48	134	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k + Fs+ +++++++ +ei+++ Cs+eg+ +++ + + +t+++ ++C a++ ++ k + w ++k++l+ +H+++p Araip.2DF3R 48 KFYKNYSKLASFSTEIRNTTRK--GDEIKNQLIICSREGRWKSKISL---TLKTNPSAGISCPARIYIHILKdVSLWIISKVVLNDSHPCCP 134 6**************98776..889*********9999877...999************988799***********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.9E-10	48	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MNDSTSNQLN ESDLDYSSEQ IKRTRCVVDE QFIPKVGMTF KTLEEAGKFY KNYSKLASFS 60 TEIRNTTRKG DEIKNQLIIC SREGRWKSKI SLTLKTNPSA GISCPARIYI HILKDVSLWI 120 ISKVVLNDSH PCCPDRVEML KQHRGLSMFV RRTIKTNEEA RIRPSKTYQS FVAAA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.2DF3R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015955930.1	9e-99	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YRU6	1e-125	A0A444YRU6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-07	FAR1 family protein