PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.2FA65

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 478aa MW: 54726.5 Da PI: 6.8144

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.2FA65	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.2	2.8e-18	63	152	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY +YAk++GF +++++++ k+ + +++ + C++eg+re++ k+ + r++ t t Cka++ v +++ ++ w+v+ +el+H+H++ Araip.2FA65 63 EFYTNYAKKLGFVTKVRNTNFDktrKDAKIPINQSLHCTREGYRESRVKA---ATRSNRITATRCKARMYVMLDReKECWVVSIVELKHSHPC 152 6*********988777665534344555699**********999...899999**********99899***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-16	63	153	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.446	285	323	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-5	296	322	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.3E-4	298	325	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MDHSNREGEP NSTVINANEG NDELTDDEVV NQEGSKLSDH SGLREEEIPV IGMSFDSLPL 60 AQEFYTNYAK KLGFVTKVRN TNFDKTRKDA KIPINQSLHC TREGYRESRV KAATRSNRIT 120 ATRCKARMYV MLDREKECWV VSIVELKHSH PCSAEKVIHY HEYRELTMHA KCVITDNDEA 180 GIRPNKTYLA LANEVDLYAN RRKWVPIFFK SEFWAGMRST QRSESMHAFY GGYLHCKSGL 240 VQFVHEYDNV LGNKEQKELE DDVVDSKGVI PLDEQKVFWG KPVYHTFIVE FDPLSRKSRC 300 ECNKFESVGI LCCHILAVCS YYRVDTVPSC YVLPRWSKNV IRKHTYIKSS HDVARSNETH 360 NLFKHLCSEF YNVAQDFVAC DEEAAILRAA LSDAKSRLTD YRASMRSTTL DGTQNTMPTQ 420 STGGVILHDI QGPSRDVVDL YIDNDRDGSV KNRFENSTTW NSSDGGGFMD LLNSFRHI

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MDHSNREGEP NSTVINANEG NDELTDDEVV NQEGSKLSDH SGLREEEIPV IGMSFDSLPL  60
AQEFYTNYAK KLGFVTKVRN TNFDKTRKDA KIPINQSLHC TREGYRESRV KAATRSNRIT  120
ATRCKARMYV MLDREKECWV VSIVELKHSH PCSAEKVIHY HEYRELTMHA KCVITDNDEA  180
GIRPNKTYLA LANEVDLYAN RRKWVPIFFK SEFWAGMRST QRSESMHAFY GGYLHCKSGL  240
VQFVHEYDNV LGNKEQKELE DDVVDSKGVI PLDEQKVFWG KPVYHTFIVE FDPLSRKSRC  300
ECNKFESVGI LCCHILAVCS YYRVDTVPSC YVLPRWSKNV IRKHTYIKSS HDVARSNETH  360
NLFKHLCSEF YNVAQDFVAC DEEAAILRAA LSDAKSRLTD YRASMRSTTL DGTQNTMPTQ  420
STGGVILHDI QGPSRDVVDL YIDNDRDGSV KNRFENSTTW NSSDGGGFMD LLNSFRHI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.2FA65

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015971718.1	1e-170	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016206358.1	1e-172	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025661319.1	1e-172	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445BNX4	0.0	A0A445BNX4_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13637	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-21	FAR1-related sequence 5