PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2FG6G
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 434aa    MW: 48712.1 Da    PI: 7.7133
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2FG6GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1652.1e-20243332391
         FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  Y +YAk + F vrk  s k  ++g+i+++ f C+++g re+++ +  +++r++++etrt+C+akl+v ++k   kw+ ++l++eHnHel+p
  Araip.2FG6G 243 YVAYAKGISFAVRKGDSIKD-EEGNIVRKFFLCNRQGLREKKHYErVDRKRTHKPETRTNCNAKLVVFLDKsCRKWRTKTLVEEHNHELVP 332
                  99**************9998.7788***************999885677788999**************9989****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-18243332IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSRPSRKLEK LGFILKLCKL LREVAACHPQ RGDWNLCRRF SKEEQKNSGT GSRHRCLSSV  60
SFEVPIRSLS RVEPLNSGGW FWISDSLVSL VSAGLCRCSS EMVKFGSYSF LFCALTLGLL  120
VIGTKADPYD FTKNRKSDSE SDLDDGSTSE LSGHWTDGWS TNSGDGDDLN GLEEPLTKEG  180
DSGHSDSEYD GRDGGGSYMH AAAEDPANSE NVMGKQFSCP DPVIASVLLS AEFNGIGDAY  240
ASYVAYAKGI SFAVRKGDSI KDEEGNIVRK FFLCNRQGLR EKKHYERVDR KRTHKPETRT  300
NCNAKLVVFL DKSCRKWRTK TLVEEHNHEL VPQEFTNVMA PHRKILEGDK AHIHSMHEAG  360
FKTTQIMGFF AHMCDYKTLY SNPVLTTGLE ALERSVSKFY MRKIFYEVQK QIEGVGALLV  420
LHRDSIGGME KFMF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2FG6G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016168213.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025670012.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Y4P41e-177A0A444Y4P4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1663528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-11FAR1-related sequence 5