PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2G7LE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 239aa    MW: 25540 Da    PI: 5.7339
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2G7LEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.76.7e-274107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+ +C++ p++     p++q++++ +++k++G++ +l+ll+a +++ r+++++sl+yeA+ r+ +Pv G++g++++++++l+++++e
  Araip.2G7LE   4 SCNGCRVLRKGCNLECPIKPCLhwiksPESQSNATLFLAKFYGRAGLLNLLTAGDPKIRPAIFKSLLYEACGRIVNPVFGSTGLLSTGSWHLCEAAVE 101
                  6************************************************************************************************9 PP

       DUF260  94 lallke 99 
                  ++l ++
  Araip.2G7LE 102 AVLSGA 107
                  988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7373109IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-224103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCNLECP IKPCLHWIKS PESQSNATLF LAKFYGRAGL LNLLTAGDPK  60
IRPAIFKSLL YEACGRIVNP VFGSTGLLST GSWHLCEAAV EAVLSGAPIR QQDASDGGDQ  120
LLNPSDIRHV VKRGKSCSSD NVLKPRKSQF KRRAEKSKPE PEPEVKLDQG VAELVVEACV  180
VNELDDSASP DSGSGLSEHV SVVVGGGAEA DSGSIESVNL ARADDGELEL ELTLGCQWL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2G7LE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016203636.11e-170LOB domain-containing protein 41
TrEMBLA0A445D2Q91e-167A0A445D2Q9_ARAHY; Uncharacterized protein
STRINGGLYMA07G10180.13e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-60LOB domain-containing protein 41