PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2PW6E
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family E2F/DP
Protein Properties Length: 338aa    MW: 37208.9 Da    PI: 7.1981
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2PW6EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.41.1e-2793175271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Araip.2PW6E  93 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsglspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 175
                  689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094047.5E-1218338IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.2E-4688181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-3492175IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-2594175IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.07E-2295176IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.00E-38180277IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.89E-36182290No hitNo description
SMARTSM011382.7E-60182336IPR014889Transcription factor DP, C-terminal
PfamPF087811.3E-33183290IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
SYVQQTQFRS VHFSSPYAPP PPPLTTTLVL ELAKSIGQSG STSKSAGLAT PAGDSTCLKL  60
DHLDIQGDDA GSQGPVGSKK KKRGQRAVGP DKSGRGLRQF SMKVCEKVES KGRTTYNEVA  120
DELVAEFADP GNSGLSPDQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTS  180
VNDIEELKSE RLVLRSKIEK KTAYLHELEE QNLIKRNEQL YSSENPPSGV SLPFILVQTR  240
PHATVEVEIS EDMQLVHFDF NSTPFELHDD NYVLKAMKFC GRPQSDNTTH NLADGGEGSS  300
MSGLNQSQVP PSVTNLPARP PTSPPLPGIL KARVKNEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-3586180193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2PW6E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187824.10.0transcription factor-like protein DPB isoform X1
RefseqXP_025642807.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-139DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A445A7A80.0A0A445A7A8_ARAHY; Uncharacterized protein
STRINGXP_004505605.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-142Transcription factor DP