PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.30WUU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 223aa    MW: 24937.8 Da    PI: 7.3704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.30WUUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.8e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde lv+ +k++G g+W+t +++ g+ R++k+c++rw +yl
      Araip.30WUU 14 RGSWTPEEDEALVEHIKKHGEGSWRTLPKHAGLQRCGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding56.37.5e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+  +++++++lG++ W++Ia+ ++ gRt++++k++w+++l
      Araip.30WUU  67 RGPFTSEEETNIIQLHALLGNR-WAAIASQLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-27564IPR009057Homeodomain-like
PROSITE profilePS5129426.491965IPR017930Myb domain
SuperFamilySSF466895.14E-3211108IPR009057Homeodomain-like
SMARTSM007178.5E-151363IPR001005SANT/Myb domain
PfamPF002495.2E-171461IPR001005SANT/Myb domain
CDDcd001676.70E-131661No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2765116IPR009057Homeodomain-like
PROSITE profilePS5129422.02566116IPR017930Myb domain
SMARTSM007173.5E-1766114IPR001005SANT/Myb domain
PfamPF002491.1E-1667112IPR001005SANT/Myb domain
CDDcd001679.56E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGKAPCCDKH GVKRGSWTPE EDEALVEHIK KHGEGSWRTL PKHAGLQRCG KSCRLRWINY  60
LRPGIKRGPF TSEEETNIIQ LHALLGNRWA AIASQLPGRT DNEIKNYWNT HLKKNLHHHS  120
GGTKQPCLSP HAGIVKSESP STRHMASTPS SSSKLESCSD ASLHLKNTVQ EQISSCKPKL  180
EYDTGGSDSG NYEYLDTSDS AFKQYLDMPD EDIEFLDHTD TTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29141167108B-MYB
1h8a_C1e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.30WUU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941612.21e-142LOW QUALITY PROTEIN: transcription factor MYB8
SwissprotQ9M2D91e-69MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A444XW511e-138A0A444XW51_ARAHY; Uncharacterized protein
STRINGXP_007143400.12e-92(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.15e-72myb domain protein 17