PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.30XFU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 259aa    MW: 28973.2 Da    PI: 5.4584
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.30XFUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.5e-194798556
                 SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++f+++q++ Le+ Fe ++ +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Araip.30XFU 47 RRFSDDQIKSLESIFETESRLEPKKKLQLARELGLQPRQVAIWFQNKRARWK 98
                 48*************************************************9 PP
2HD-ZIP_I/II120.39.9e-3946136393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   rr+s++q+k+LE+ Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L  +l++
  Araip.30XFU  46 TRRFSDDQIKSLESIFETESRLEPKKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYTILRNNYNNLASRFESLKKEKQALLIQLQK 136
                  79***********************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-1825102IPR009057Homeodomain-like
PROSITE profilePS5007116.66540100IPR001356Homeobox domain
SMARTSM003893.6E-1643104IPR001356Homeobox domain
CDDcd000861.58E-1547101No hitNo description
PfamPF000463.3E-164798IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-1947106IPR009057Homeodomain-like
PRINTSPR000311.1E-57180IPR000047Helix-turn-helix motif
PROSITE patternPS0002707598IPR017970Homeobox, conserved site
PRINTSPR000311.1E-58096IPR000047Helix-turn-helix motif
PfamPF021835.7E-16100141IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEYATYSSAA EVCEGVETPP APAASSSSIS SMMICKKKKN INSNNTRRFS DDQIKSLESI  60
FETESRLEPK KKLQLARELG LQPRQVAIWF QNKRARWKSK QLERDYTILR NNYNNLASRF  120
ESLKKEKQAL LIQLQKLNDL IQKPSMEKKT QSIDSESENG DTTKSGSELK VKPISQSSMA  180
ARSSEHAVLC GGGGGGGALS DDDTSIKVEY FGNLEDGLVN FAHDHGDGSL TSPEDWGHFD  240
SDDLLGQSTS DYQWWDFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.30XFU
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181965.10.0homeobox-leucine zipper protein ATHB-12
RefseqXP_025631770.10.0homeobox-leucine zipper protein ATHB-12
SwissprotP468974e-71ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A445ACW20.0A0A445ACW2_ARAHY; Uncharacterized protein
STRINGGLYMA16G02390.12e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-67homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]