PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.328GZ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 539aa MW: 61696.7 Da PI: 8.6632

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.328GZ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.2	4.2e-16	61	147	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y k +GFs+r+++++++ +ei+++ +Cs+egk +++ + ++t+++ +C ++ ++ k g w ++k++l+H+H+++p Araip.328GZ 61 KFYRNYTKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---IEKTNPTAGLNCPTRIYIHTLKdVGAWIISKVVLDHSHPCCP 147 6**************98887..8889*********998877...999***********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-13	61	147	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.174	326	362	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-4	328	359	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-4	337	364	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MDDSSSDCQL NQGEVDYEFE SNEVPETLEC RSELFWPLFV VDDQFVPKVG MTFTTLEDAG 60 KFYRNYTKAA GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPIEKTN PTAGLNCPTR 120 IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSICRTIENN EEAGIRPSKT 180 YQSFVAAAGD LYEDRHIWIP IYLDHNFWAG MRSTQRSESM HSFFNKFITR NSSLIQFVKQ 240 YDNCLGSREQ AERESDAADF HMVIPCATKS SIEAQFQDVY THQKFREFQA QFRGKANCIT 300 RLTNSALGYS VYEVGEQVSS SIFNKFVVTY DSVAAEVKCQ CLLFESRGIL CRHALSVLSF 360 ERVSQVSPRY ILERWSKKVK RRHTHIKSSH DEPLLEPRSK RFDQLVFRSQ NIYEFASESE 420 ELTAILHRAY DNVMAEMESL KAKRKGTSSL SHEDANLESV NELQSPPRIR TRGRPKNRLG 480 SKLDKQIANA TKKKKTKVLS EINLFDAASV VHSNSSQYQG HVMNYQFRVP GAVDNSLAV

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MDDSSSDCQL NQGEVDYEFE SNEVPETLEC RSELFWPLFV VDDQFVPKVG MTFTTLEDAG  60
KFYRNYTKAA GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPIEKTN PTAGLNCPTR  120
IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSICRTIENN EEAGIRPSKT  180
YQSFVAAAGD LYEDRHIWIP IYLDHNFWAG MRSTQRSESM HSFFNKFITR NSSLIQFVKQ  240
YDNCLGSREQ AERESDAADF HMVIPCATKS SIEAQFQDVY THQKFREFQA QFRGKANCIT  300
RLTNSALGYS VYEVGEQVSS SIFNKFVVTY DSVAAEVKCQ CLLFESRGIL CRHALSVLSF  360
ERVSQVSPRY ILERWSKKVK RRHTHIKSSH DEPLLEPRSK RFDQLVFRSQ NIYEFASESE  420
ELTAILHRAY DNVMAEMESL KAKRKGTSSL SHEDANLESV NELQSPPRIR TRGRPKNRLG  480
SKLDKQIANA TKKKKTKVLS EINLFDAASV VHSNSSQYQG HVMNYQFRVP GAVDNSLAV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.328GZ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445AF03	0.0	A0A445AF03_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	6e-36	far-red elongated hypocotyls 3