PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.32F9I
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 274aa    MW: 31238.2 Da    PI: 6.8665
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.32F9IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.2e-12897298
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 fk+ +   +l+ g+l +pk+f  +hg + +++  + l+ ++g  W++    + ++g++++++GWkeF++   L+ g  + F+++++s+    v +f+
  Araip.32F9I  8 FKIVL-RQNLEDGNLEVPKTFSMKHGDSVPNP--VYLKPRDGTAWKIDW--SEYDGAILFENGWKEFASYYSLDHGHLLWFEYNQTSNI--EVNIFD 97
                 55543.45677778***********8886676..***************..*******************************9876554..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-195100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-17599IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-8697No hitNo description
PROSITE profilePS5086311.603699IPR003340B3 DNA binding domain
SMARTSM010193.5E-9799IPR003340B3 DNA binding domain
PfamPF023623.9E-9897IPR003340B3 DNA binding domain
PRINTSPR009293.0E-7123133IPR017956AT hook, DNA-binding motif
PRINTSPR009293.0E-7183194IPR017956AT hook, DNA-binding motif
PROSITE patternPS003540211222IPR000637HMG-I/HMG-Y, DNA-binding, conserved site
PRINTSPR009293.0E-7212222IPR017956AT hook, DNA-binding motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MASSACFFKI VLRQNLEDGN LEVPKTFSMK HGDSVPNPVY LKPRDGTAWK IDWSEYDGAI  60
LFENGWKEFA SYYSLDHGHL LWFEYNQTSN IEVNIFDMTC LEIDYPSMDH ISDDDSIEIL  120
NELPPRGWPR KTEKAAPKTP SPSTSKMFTS SAKTEVVKWC PEIDYPSKDH IDDDNMVMVE  180
NEPPRRGRGR PRKTEKAAPK TPSACTSKMF TSSRRGRGRP RKTEKAAPKT PSPCTSKMFT  240
SSAKTKEVKW CPEIHYPSKD HIDDDNMVSA PTEF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.32F9I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182506.10.0proteoglycan 4-like isoform X1
RefseqXP_016182509.10.0B3 domain-containing transcription factor VRN1-like isoform X5
RefseqXP_025681367.10.0proteoglycan 4 isoform X1
TrEMBLA0A444X8L01e-174A0A444X8L0_ARAHY; Uncharacterized protein
STRINGXP_007153416.12e-40(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.18e-17B3 family protein