PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.33AAN

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 178aa MW: 19801.5 Da PI: 7.736

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.33AAN	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.6	2e-17	44	133	1	83
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++ ++ +iyr+++++++lt+GW+ Fv+ ++L +gD+v+F Araip.33AAN 44 FCKQLTASDTSAHGGFSVPRRVAEKIfppllsdySIQPPV-QELVARDLHDNVLTFCHIYRGQPKHHLLTTGWSLFVSGKRLFAGDSVLFI 133 99****************************98555554.49*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.32E-34	33	164	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.9E-28	36	139	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.09E-14	43	132	No hit	No description
Pfam	PF02362	5.4E-15	44	133	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-9	44	147	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MQFGFELGEF HTFNVDYVSN MYDKEALLRL DLALKSNKAQ PEFFCKQLTA SDTSAHGGFS 60 VPRRVAEKIF PPLLSDYSIQ PPVQELVARD LHDNVLTFCH IYRGQPKHHL LTTGWSLFVS 120 GKRLFAGDSV LFIQRANRQP ANISSSVLSS DSMHIGILAA AAHAAANNSP FTIFYNPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	9e-64	34	177	148	300	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.33AAN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022929594.1	3e-78	auxin response factor 19-like
Refseq	XP_022996496.1	3e-78	auxin response factor 19-like
Refseq	XP_025656247.1	4e-78	auxin response factor 19 isoform X2
Refseq	XP_025700759.1	4e-78	auxin response factor 19 isoform X1
Refseq	XP_025700760.1	4e-78	auxin response factor 19 isoform X1
Refseq	XP_025700761.1	4e-78	auxin response factor 19 isoform X1
Refseq	XP_025700762.1	4e-78	auxin response factor 19 isoform X1
Refseq	XP_025700764.1	4e-78	auxin response factor 19 isoform X1
Refseq	XP_025700765.1	4e-78	auxin response factor 19 isoform X1
Refseq	XP_025700766.1	4e-78	auxin response factor 19 isoform X2
Swissprot	Q0D9R7	2e-68	ARFS_ORYSJ; Auxin response factor 19
TrEMBL	A0A426ZSK9	6e-78	A0A426ZSK9_ENSVE; Auxin response factor
STRING	XP_010541969.1	2e-73	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	4e-64	auxin response factor 19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang S, et al. The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1. Plant Cell Environ., 2015. 38(4): p. 638-54 [PMID:24995795]