PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.389PD

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 159aa MW: 17974.3 Da PI: 6.7557

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.389PD	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.6	5.3e-15	76	157	1	86
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 kfY++YAk + Fs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k + w ++k++l+H+ Araip.389PD 76 KFYRNYAKAADFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVSAWIISKVVLDHS 157 6**************98887..8889*********998877...8999**********998879**********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-12	76	157	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDYEFK SNEVPEQTLG LVVVVWVYYI RHDWLSCCGS GPLSVVDDQF 60 VPKVGMTFTT LEDAEKFYRN YAKAADFSTR VRSTNRKGNE IKNQLITCSR EGKWKSKISP 120 TEKTNPTAGL NCPARIYIHT LKDVSAWIIS KVVLDHSNS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.389PD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-149	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997266.1	4e-77	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445CTS6	5e-88	A0A445CTS6_ARAHY; Uncharacterized protein
TrEMBL	A0A445E9M1	4e-87	A0A445E9M1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	6e-09	FAR1-related sequence 6