PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.3B05D
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 978aa    MW: 110545 Da    PI: 5.0979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.3B05DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.8e-14853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
      Araip.3B05D  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
      Araip.3B05D  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139214.2E-131070No hitNo description
CDDcd001679.11E-121053No hitNo description
SuperFamilySSF466898.27E-2133106IPR009057Homeodomain-like
CDDcd116591.92E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.2E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118318.5E-56406651IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 978 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR  180
LASLQKKREL KAAGIDVRQR RRKRKGIDYN AEIPFEKRPP PGFYDIADED RPVEQPHFPT  240
TIEELEGKRR IDVETQLRKQ DIAKNKIAQR QDAPSAILHA NKLNDPETVR KQTKLMLPPP  300
QISDQELDEI ARMGYANDLA GSDEFGEGSA ATRALLANYA QTPGRGMTPL RTPQRTPASK  360
GDAVMMEAEN LARLRESQTP LLGGENPELH PSDFTGVTPK RKEVQTPNPM LTPSATPGVA  420
GLTPRIGMTP ARDGYASMTP KGTPLRDELR INEDLDMHER AKLELQRAEI RRSLCSGLGS  480
LPQPKNEYQI VMQPIPEDAE EPEEKIEEDM SDRIAREKAE EEARQQALLR KRSKVLQREL  540
PRPPAASLEL IRNSLVRADD KSSFVPPTSI EQADEMIRRE LLALLEHDNA KYPLDEKVNK  600
EKKKGAKRVV NEPVVPVIEE FHEEEMKDAD KLIKDEAHYL RVALGHESEP LEEFIEAHRT  660
SLNDLMFFPT RHAYGLSSVA GNMEKLAALQ NEFENVRKKL DDGKEKVVKL EKKAILLTQG  720
YESGMHSVMR EMRAKNSLWP QIEATFKQMD IAATELECFE ALQKQEKLAA SHRINNLWEE  780
VQKQKELERT LQYKYGNLME EVERIQNVME QYRVQAQKQE EIEANNRAHE STETVADKTG  840
AQDSKNFKAA PLAEENETAI ATDLSRDESE AGSVQDQTTA SQKNDVDVDS DDIKQTDDPN  900
AKLPDATLVA KVDVGKVEGT ITDGHIDNGK TALDEGATVG NVVEKDLAMD GENSHDDSTP  960
EKTTVSDEGD EMQVGDGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028073800Cell division cycle 5-like protein
5xjc_L0.028073800Cell division cycle 5-like protein
5yzg_L0.028073800Cell division cycle 5-like protein
5z56_L0.028073800Cell division cycle 5-like protein
5z57_L0.028073800Cell division cycle 5-like protein
5z58_L0.028073800Cell division cycle 5-like protein
6ff4_L0.028073800Cell division cycle 5-like protein
6ff7_L0.028073800Cell division cycle 5-like protein
6icz_L0.028073800Cell division cycle 5-like protein
6id0_L0.028073800Cell division cycle 5-like protein
6id1_L0.028073800Cell division cycle 5-like protein
6qdv_O0.028073800Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KKRELKAAGIDVRQRRRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.3B05D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183616.10.0cell division cycle 5-like protein isoform X1
RefseqXP_025633285.10.0cell division cycle 5-like protein isoform X1
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A445AID60.0A0A445AID6_ARAHY; Uncharacterized protein
STRINGGLYMA10G30870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]