PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.3BF0N

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 513aa MW: 58896.7 Da PI: 9.1374

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.3BF0N	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58	3.2e-18	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C+a++ ++ k g w ++k++l+H+H+++p Araip.3BF0N 51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTASLNCRARIYIHTLKdVGAWIISKVVLDHSHPCCP 137 6*************998776..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-15	51	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA 60 GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTASLNCRAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCPSKA EMLKQHRKLS MSIRRTIENN EEADLYEDRH IWVPIYLDHH 180 FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FIKQYDNCLR SREQAERESD AVDFHTVIPC 240 ATKSSIEAQF QDAYTHQKFR EVQAQFRGKA NCITRLTNSA LGYSVYEVGE QVSSSIFNKF 300 VVTYDSVVAE VKCQYLLFES RGILCRHALS ILSFEQVSQV SPRYILERWS KKVKRRHTHM 360 KSSHDEPLME PRSKRFDQLV FRSQNICEFA SESKELTTIL HRAYDNVMAE MEFLKAKKKG 420 TSSLSHEDAN LESVNELQSP PRIRTRGRPK NMLGSKLDKQ IANATKKKKT KVLSEINLFD 480 AASAVHSNSN QYQGHVMNYQ FRVPAAGDNS LGV

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MDHSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTASLNCRAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRKLS MSIRRTIENN EEADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FIKQYDNCLR SREQAERESD AVDFHTVIPC  240
ATKSSIEAQF QDAYTHQKFR EVQAQFRGKA NCITRLTNSA LGYSVYEVGE QVSSSIFNKF  300
VVTYDSVVAE VKCQYLLFES RGILCRHALS ILSFEQVSQV SPRYILERWS KKVKRRHTHM  360
KSSHDEPLME PRSKRFDQLV FRSQNICEFA SESKELTTIL HRAYDNVMAE MEFLKAKKKG  420
TSSLSHEDAN LESVNELQSP PRIRTRGRPK NMLGSKLDKQ IANATKKKKT KVLSEINLFD  480
AASAVHSNSN QYQGHVMNYQ FRVPAAGDNS LGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.3BF0N

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-33	far-red elongated hypocotyls 3