PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.3C72S

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 236aa MW: 27320.8 Da PI: 7.5297

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.3C72S	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.5	8.9e-18	81	170	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY++YAk+v F +r+++++ k+ + +++ Cs+eg+re++ k+ + r + t gCka++ v +++ +++w vtklel+H+H++ Araip.3C72S 81 EFYSNYAKKVEFVTRIRNTNFDktrKELKVPINQSIHCSREGYRESRVKA---AMRVKRITTAGCKARMYVMLDRhNDNWLVTKLELKHTHAC 170 6************999887733345556689**********999...888899999*******999*************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-15	81	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDTPIFEEAL YGSAYDVREN FNSIDVNVPC LSEDDTPHVE QGKESEDAIQ KKDDATVSNN 60 EVFAGPGSHW NSNGGNPRAQ EFYSNYAKKV EFVTRIRNTN FDKTRKELKV PINQSIHCSR 120 EGYRESRVKA AMRVKRITTA GCKARMYVML DRHNDNWLVT KLELKHTHAC SAEQAVHYSE 180 YRKLTMHAKC VCLEGSVFTL LDFSPRVNRM IDLYEDRRMW VPIYFQGEFW AGMRST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.3C72S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015949654.1	1e-107	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445CAQ0	1e-128	A0A445CAQ0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14126	2	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-09	FAR1 family protein