PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.3E954
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 430aa    MW: 46230.9 Da    PI: 5.9825
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.3E954genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.6e-1761106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd  l ++v+q+G ++W+ Iar ++ gR++k+c++rw + 
      Araip.3E954  61 KGPWSPEEDAVLSRLVAQFGARNWSMIARGVP-GRSGKSCRLRWCNQ 106
                      79******************************.***********985 PP
2Myb_DNA-binding56.27.8e-18113157147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
      Araip.3E954 113 RKPFTEEEDCIIVSAHTIHGNK-WAAIARLLP-GRTDNAIKNHWNST 157
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.92656111IPR017930Myb domain
SuperFamilySSF466891.27E-3058154IPR009057Homeodomain-like
SMARTSM007171.1E-1460109IPR001005SANT/Myb domain
PfamPF002497.6E-1661106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2562114IPR009057Homeodomain-like
CDDcd001673.37E-1463105No hitNo description
SMARTSM007172.0E-16112160IPR001005SANT/Myb domain
PROSITE profilePS5129421.498112162IPR017930Myb domain
PfamPF002492.2E-14113157IPR001005SANT/Myb domain
CDDcd001672.51E-12115158No hitNo description
Gene3DG3DSA:1.10.10.606.5E-23115161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MTEEEDRASV EPIAGNGVSL PQELVGGGGG TAETEPAGRD AEVTVVGDGN SGGGAAAGKV  60
KGPWSPEEDA VLSRLVAQFG ARNWSMIARG VPGRSGKSCR LRWCNQLDPC VKRKPFTEEE  120
DCIIVSAHTI HGNKWAAIAR LLPGRTDNAI KNHWNSTLKR RCMEQGRYVP PRVEAMEDGS  180
IEKTKASSEE TLSVGDMNSY PTQVRNVVMN TEIKQHEDKP PTTRNDVSEV EQNPTLHRPV  240
ARISAFSVYN PTSRPTNGSS SSKILPLQSP LIQLPKVVEG ACKLFDGIEC EPMVPLECGH  300
GCCAPESGGS HSHGSSLLGP EFVDYLDSPP FLSHELISIA TDLNNIAWIK SGLENHGGAK  360
VTDNAANLTG TQGAATASQT GFLGQGQKND FMQMQYEEGP GKVRFLGTNT MKEMLSSKMP  420
RQHFAMPAEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-39601616107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.3E954
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016167568.10.0transcription factor MYB1-like
RefseqXP_025667889.10.0transcription factor MYB1
TrEMBLA0A444YD240.0A0A444YD24_ARAHY; Uncharacterized protein
STRINGGLYMA14G06870.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-87myb domain protein 109