PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.3F3QQ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 277aa    MW: 32091.7 Da    PI: 10.0767
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.3F3QQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3331.1e-105633698
                 EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 ++l+ ++g +W++    ++++g+++++kGWkeF+    L+ g ++ F+++g+s+   +v +f+
  Araip.3F3QQ  5 VKLQPPDGTEWRIDW--TNRDGEILFGKGWKEFATFYTLENGHVLWFEYNGTSNI--KVNIFD 63
                 78999**********..*******************************9986555..888886 PP
2B341.13.1e-131972751799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +p  f++ + ++++   +  +     ++W  +liy  +++  +++ +W+ F ++n+Lk+gD+++F+l++r++  l+v+++r+
  Araip.3F3QQ 197 NIPVCFFRMYFENTK---QYAILRVGKKQWHATLIYYPNRKNALIS-NWRLFLEENNLKAGDVCIFELINRQGPDLKVHIRRS 275
                  688888888865533...366667788*********9998777666.**********************999999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.252165IPR003340B3 DNA binding domain
CDDcd100173.10E-7263No hitNo description
Gene3DG3DSA:2.40.330.102.6E-13374IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-13372IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-8563IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-19174275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16175275IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.4E-7182276IPR003340B3 DNA binding domain
PfamPF023624.7E-11197275IPR003340B3 DNA binding domain
CDDcd100174.78E-12198274No hitNo description
PROSITE profilePS5086310.236221276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MPNPVKLQPP DGTEWRIDWT NRDGEILFGK GWKEFATFYT LENGHVLWFE YNGTSNIKVN  60
IFDMSALEID YPSNGRIGDD NSVEILDEPP PRRGRGRPKK KVIAEPKQSR ASTSKTMKSA  120
IKAKDIDKNP NTQNLKLHVE NEKDGQSEET ADLKLPIIQR ARPDMDEVIR EAKKFKSKNP  180
SFVIKIKQKH QTGSPANIPV CFFRMYFENT KQYAILRVGK KQWHATLIYY PNRKNALISN  240
WRLFLEENNL KAGDVCIFEL INRQGPDLKV HIRRSHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.3F3QQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020968971.10.0B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_025681369.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A444XB910.0A0A444XB91_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-22B3 family protein