PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.3FS7Q

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 474aa MW: 54644.1 Da PI: 9.057

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.3FS7Q	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.4	4.1e-12	6	67	26	89
FAR1 26 geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 + +++ + C++eg+re++ k+ + r++ t t Cka++ v +++ ++ w+v+k+el H+H++ Araip.3FS7Q 6 KIPINQSLHCTREGYRESRVKA---ATRSNRITATRCKARMYVMLDReKECWVVSKVELRHSHPC 67 5567899**********999...899999**********99899***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-9	8	68	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.223	250	286	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	261	288	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MRKDAKIPIN QSLHCTREGY RESRVKAATR SNRITATRCK ARMYVMLDRE KECWVVSKVE 60 LRHSHPCSAD KAVHYHEYRE LTMHAKCVIT DNDEAGIRPN KTYLALTNEV DLYVNRRKWV 120 PIFFKSEFWA GMRSTQRSES MHAFYGGYLH CKSGLVQFVH EYDNVLENKE QKELEDDAAD 180 SKGVIPCIGS TGIERQFQQE YTSNMFRTLQ LEVRKKTDCV VRSTEQKGDT ISIKVDEQKV 240 FWGKPVYHTF IVQFDPLSRK SRCGCNKFES VGILCCHILA IWSYYRVDTV PSCYVLPRWS 300 KNVIRKHTYI KSSHDVARSN ESHNLFRNLC SEFYNVAQEF VACEEEAAIL RAALLDAKSK 360 LTDHRASMRS STLDGTQNRM PTRSTCDVIL HDIQGPSRVK TKGRPKGKRL GAELDKSIKK 420 SMENRKRKSQ PDVVDPRTDN DCHGSVDNRV EDSTIWNSAD GGGFMDLLNS FRHL

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MRKDAKIPIN QSLHCTREGY RESRVKAATR SNRITATRCK ARMYVMLDRE KECWVVSKVE  60
LRHSHPCSAD KAVHYHEYRE LTMHAKCVIT DNDEAGIRPN KTYLALTNEV DLYVNRRKWV  120
PIFFKSEFWA GMRSTQRSES MHAFYGGYLH CKSGLVQFVH EYDNVLENKE QKELEDDAAD  180
SKGVIPCIGS TGIERQFQQE YTSNMFRTLQ LEVRKKTDCV VRSTEQKGDT ISIKVDEQKV  240
FWGKPVYHTF IVQFDPLSRK SRCGCNKFES VGILCCHILA IWSYYRVDTV PSCYVLPRWS  300
KNVIRKHTYI KSSHDVARSN ESHNLFRNLC SEFYNVAQEF VACEEEAAIL RAALLDAKSK  360
LTDHRASMRS STLDGTQNRM PTRSTCDVIL HDIQGPSRVK TKGRPKGKRL GAELDKSIKK  420
SMENRKRKSQ PDVVDPRTDN DCHGSVDNRV EDSTIWNSAD GGGFMDLLNS FRHL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.3FS7Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016206358.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025661319.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YMA1	0.0	A0A444YMA1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23343	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-29	FAR1-related sequence 5