PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.3GG4Y
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 476aa    MW: 54212.5 Da    PI: 7.7981
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.3GG4YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.27.5e-1559145191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk + Fs+r+++++++  ++ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g   ++k++l+H+H+++p
  Araip.3GG4Y  59 KFYRNYAKAASFSTRVRSTNRK--ENEIKNQLITCSREGKWKSKISL---TEKTNPTAGLNCPARIYIHTLKdVGAGIISKVVLDHSHPCCP 145
                  6****************98887..7779**************99887...8999**************99887999*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1159145IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.087324360IPR007527Zinc finger, SWIM-type
SMARTSM005750.0033335362IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPEFLTW CILPPLSVVD DQFVLKVGMT FTTLEDAGKF  60
YRNYAKAASF STRVRSTNRK ENEIKNQLIT CSREGKWKSK ISLTEKTNPT AGLNCPARIY  120
IHTLKDVGAG IISKVVLDHS HPCCPSKAEM LKQHRELSMS ICRTIENNEE AGIRPSKTYQ  180
SFVAAAGDLY EDRHIWVPIY LDHHFLAGMR STQMSESMYS FFNKFITRNS SLIQFVKQYD  240
NCLGSRAQAE RESNAADFHT VIPCATKSSI EAQFQDVYTH QKFMEVQAQF KGKANCITRL  300
TNSALGYSVY EVGEQVSSSI FNKFVVTYDS VAAEVKCQCL LFESRGILCR HTLSVLSFEQ  360
VSQVSPRYIL ERWSKKVKRR HTHIKSSHDE PLLEPRSKRF DQLVFRSQNI CEFASESEEL  420
TAILHCAYDN IMAEMESLKA KRKGTSSLSH EDANLESVNE LQSPPRIRTR GRPKIG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.3GG4Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445AF030.0A0A445AF03_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.26e-35far-red elongated hypocotyls 3