PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.3P8WL

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YB

Protein Properties

Length: 151aa MW: 16728.8 Da PI: 6.0766

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.3P8WL	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	45.2	2.2e-14	12	106	6	95
NF-YB 6 rflPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++lP + v ri+k l +++ is kda e + fi ++++ a+d c++ kr+ +n+dd++ al + f +++ plk+ l+ +r+ ++ Araip.3P8WL 12 EELPRTIVRRIVKDKLSrcsEDGDISvnKDALLAFSESARIFIHYISATANDICKESKRQIVNADDIFKALEETDFSEFIRPLKASLEDFRKKNA 106 57899999999999986222455554338999999********************************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-32	10	139	IPR009072	Histone-fold
Pfam	PF00808	2.9E-10	13	82	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	8.38E-25	14	135	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MAEEAKPVPE AEELPRTIVR RIVKDKLSRC SEDGDISVNK DALLAFSESA RIFIHYISAT 60 ANDICKESKR QIVNADDIFK ALEETDFSEF IRPLKASLED FRKKNAGKKA AVSKEKESGK 120 NKKRKVEGEP SGKVKSDNGE SPEKGESGDA E

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.3P8WL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016187587.1	1e-103	DNA polymerase epsilon subunit 3
Refseq	XP_025641569.1	1e-103	DNA polymerase epsilon subunit 3
TrEMBL	A0A445AAE4	1e-102	A0A445AAE4_ARAHY; Uncharacterized protein
STRING	GLYMA11G18960.1	2e-68	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11863	32	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	4e-42	nuclear factor Y, subunit B11