PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.3TF8Q

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 928aa MW: 106642 Da PI: 7.9845

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.3TF8Q	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.9	2.5e-21	93	176	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a+++++++++++w++ ++ leHnH l Araip.3TF8Q 93 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----HMRKETRTGCPAMIRMRLMDSQRWRILEVTLEHNHML 176 5899*************************************9988.....999******************************98 PP
2	FAR1	71.7	1.7e-22	570	654	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a+++++ ++++w+v++++leHnH++ Araip.3TF8Q 570 NYYNSYAKEIGFAIRVKSSWTRRNSKEKRGAVLCCNCEGFKTLKEAN-----SHRKETRTGCLAMIRLRSVESNRWRVDEVKLEHNHSFD 654 69**************************************99888.....999******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-18	93	176	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.644	343	379	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.6E-4	351	375	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	354	381	IPR006564	Zinc finger, PMZ-type
Pfam	PF03101	3.9E-20	570	654	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.792	808	846	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.8E-6	820	843	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-5	821	848	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence Send to blast
RCKNLDKVLG SLDKDQTSNI FITSRAKRFE PVLMEETSFC CEQLPEGECI EAQKEEDGSL 60 VELDCQNGFS EGRKEFVTPA VGMEFESYDD AYNYYICYAK EVGFRVRVKN SWFKRNSREK 120 YGAVLCCSSQ GFKRIKDVNH MRKETRTGCP AMIRMRLMDS QRWRILEVTL EHNHMLGSKI 180 HKSVKKMGTG TKKKSLPSSN AEVHTVKLYR ALVIDAGGNS SAISNAREDR TLSEFSNRFV 240 HKQTPLKEFL DKYELALHKK HKEEALADIE SRSSTPLLKT RCSFELQLSR MYTRQMFLKF 300 QFEVEEMYSC FGTTQLHVDG PVIIFLVKER VLCEGNRREI RDFEVLYSRT AGEVRCICSC 360 FNFYGYLCRH ALCVLNFNGV EEIPSRYILS RWKKDYKRLH IPDHNTGVPD DIDHSQWSNQ 420 LFRSALQVVE EGTVSVDHYN VALHAIEESL NKPPGAKSKR GAKFSMSINN NNDLNENTVR 480 VCSPSTNDKS FSLTTIDDGS PNSDQLLEVA DEQNILVNGC DQLFEIDGSE HENGRDETTV 540 VDGYAGESQG KGYPPPVVGM EFDTYDDAYN YYNSYAKEIG FAIRVKSSWT RRNSKEKRGA 600 VLCCNCEGFK TLKEANSHRK ETRTGCLAMI RLRSVESNRW RVDEVKLEHN HSFDPERAQN 660 SKSHKRTDGG SKRKLEPTLD VEVRTIKLYR MPVGDASGYG SPNSNEGGTS TNLNFSRHLK 720 LRKVMEQKRK TEAIDDFKSR DSSPSLRTRY YYELQLSKLY TNAMFRKVQE EIVMMSSCFG 780 ITESQTNGSS VTYMVKVRQG EELVQDAGHV EVTYDKTGAE VRCSCCCFNF KGYLCRHALS 840 ILDYNGVEEI PCQYVLPRWR KDFKRLYVPH LTSYNVDITN PVQCFDHLYK RAMQVVEEGM 900 ISQAHYMVSW QAFKESLNKI RLVSDKIE

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence Send to blast

RCKNLDKVLG SLDKDQTSNI FITSRAKRFE PVLMEETSFC CEQLPEGECI EAQKEEDGSL  60
VELDCQNGFS EGRKEFVTPA VGMEFESYDD AYNYYICYAK EVGFRVRVKN SWFKRNSREK  120
YGAVLCCSSQ GFKRIKDVNH MRKETRTGCP AMIRMRLMDS QRWRILEVTL EHNHMLGSKI  180
HKSVKKMGTG TKKKSLPSSN AEVHTVKLYR ALVIDAGGNS SAISNAREDR TLSEFSNRFV  240
HKQTPLKEFL DKYELALHKK HKEEALADIE SRSSTPLLKT RCSFELQLSR MYTRQMFLKF  300
QFEVEEMYSC FGTTQLHVDG PVIIFLVKER VLCEGNRREI RDFEVLYSRT AGEVRCICSC  360
FNFYGYLCRH ALCVLNFNGV EEIPSRYILS RWKKDYKRLH IPDHNTGVPD DIDHSQWSNQ  420
LFRSALQVVE EGTVSVDHYN VALHAIEESL NKPPGAKSKR GAKFSMSINN NNDLNENTVR  480
VCSPSTNDKS FSLTTIDDGS PNSDQLLEVA DEQNILVNGC DQLFEIDGSE HENGRDETTV  540
VDGYAGESQG KGYPPPVVGM EFDTYDDAYN YYNSYAKEIG FAIRVKSSWT RRNSKEKRGA  600
VLCCNCEGFK TLKEANSHRK ETRTGCLAMI RLRSVESNRW RVDEVKLEHN HSFDPERAQN  660
SKSHKRTDGG SKRKLEPTLD VEVRTIKLYR MPVGDASGYG SPNSNEGGTS TNLNFSRHLK  720
LRKVMEQKRK TEAIDDFKSR DSSPSLRTRY YYELQLSKLY TNAMFRKVQE EIVMMSSCFG  780
ITESQTNGSS VTYMVKVRQG EELVQDAGHV EVTYDKTGAE VRCSCCCFNF KGYLCRHALS  840
ILDYNGVEEI PCQYVLPRWR KDFKRLYVPH LTSYNVDITN PVQCFDHLYK RAMQVVEEGM  900
ISQAHYMVSW QAFKESLNKI RLVSDKIE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.3TF8Q

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016195012.1	0.0	uncharacterized protein LOC107635980
Swissprot	Q9SSQ4	1e-106	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A445DIY1	0.0	A0A445DIY1_ARAHY; Uncharacterized protein
STRING	XP_004486559.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-108	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]