PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.40KRS

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 353aa MW: 40068.6 Da PI: 7.0251

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.40KRS	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.2	1e-16	113	199	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY +YAk+vGF +++++++ k ++e +++ C++ r ++ k+ r+++ + gCka++ vk +k +++w k+el H+H++ Araip.40KRS 113 DFYVSYAKKVGFATKIRTTTFDKITKEPVNQAIHCNRDRIRGSRVKA---PTRKNPISAAGCKARIYVKFDKeKQEWIFFKVELRHTHPC 199 6*****************************************999...89999***********9999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-14	113	199	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MSTSQVEGVS SVVALPAPSP RRSSLMECVV AEPVDCVPSP GGNEISSNSN ENLVEPLVID 60 HVQMTKATQM FDVTDVGSDE MDIWDELPDH GTLEEDEIPS VGMRFAKLQL AHDFYVSYAK 120 KVGFATKIRT TTFDKITKEP VNQAIHCNRD RIRGSRVKAP TRKNPISAAG CKARIYVKFD 180 KEKQEWIFFK VELRHTHPCS VKKAVHYREY RQLSMHANSV KDLYDDRRMW VPIFFKGEFW 240 AAMRSTQRSE SMHAFYGGIL HSKTSLVQFV HEYDNVLGSK DYLERGPITH LARALICVLE 300 AIKLHSKTSL VQFVHEYDNV LGSKEQRELE DDVVDSRGVI PCATSSPMEK QFQ

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MSTSQVEGVS SVVALPAPSP RRSSLMECVV AEPVDCVPSP GGNEISSNSN ENLVEPLVID  60
HVQMTKATQM FDVTDVGSDE MDIWDELPDH GTLEEDEIPS VGMRFAKLQL AHDFYVSYAK  120
KVGFATKIRT TTFDKITKEP VNQAIHCNRD RIRGSRVKAP TRKNPISAAG CKARIYVKFD  180
KEKQEWIFFK VELRHTHPCS VKKAVHYREY RQLSMHANSV KDLYDDRRMW VPIFFKGEFW  240
AAMRSTQRSE SMHAFYGGIL HSKTSLVQFV HEYDNVLGSK DYLERGPITH LARALICVLE  300
AIKLHSKTSL VQFVHEYDNV LGSKEQRELE DDVVDSRGVI PCATSSPMEK QFQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.40KRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016208070.1	1e-141	protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_025628062.1	1e-141	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444XH84	1e-157	A0A444XH84_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14126	2	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-10	FAR1 family protein